Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.18516	H3f3b	H3 histone, family 3B	11	11 E2	15081
Gene Ontology	chromosome | DNA binding | nucleosome | nucleus
Human Homolog	H3F3B[H3 histone, family 3B (H3.3B)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 297 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAGTAAGAA 71.8 0.0718 P8 Cb GC TTTCTGTATG 47.3 0.0473 P8 Cb GC GTTGTCTTTG (2) 13.1 0.0131 P8 Cb GC TTTATAAACT (3) 11.4 0.0114 P8 Cb GC AAAAGCAAAA (2) 9.8 0.0098 P8 Cb GC AAAAGCAAGA (4) 9.8 0.0098 P8 Cb GC CCCAAAGACA (5) 8.2 0.0082 P8 Cb GC GCCTCCTGGG (10) 4.9 0.0049 P8 Cb GC GGTCACACTA (4) 4.9 0.0049 P8 Cb GC TTTCTTGTTT (7) 4.9 0.0049 P8 Cb GC AAAATACAAA (3) 1.6 0.0016 P8 Cb GC AATCAAGAAA (2) 1.6 0.0016 P8 Cb GC ATGGTGACTC (3) 1.6 0.0016 P8 Cb GC CCCAAGGACA (15) 1.6 0.0016 P8 Cb GC GGAAGAGGGA (5) 1.6 0.0016 P8 Cb GC GTTTATTAAA (7) 1.6 0.0016 P8 Cb GC TGGTAGAATG 1.6 0.0016 P8 Cb GC TTCACTAACC 1.6 0.0016 P8 Cb GC TTCTGGTGGT (6) 1.6 0.0016 P8 Cb GC TTTAATTCAC (3) 1.6 0.0016 Cb medulloblastoma GGAGTAAGAA 41.6 0.0416 Cb medulloblastoma GTTGTCTTTG (2) 25.4 0.0254 Cb medulloblastoma AAAAGCAAAA (2) 9.2 0.0092 Cb medulloblastoma GGTCACACTA (4) 6.9 0.0069 Cb medulloblastoma TTTCTGTATG 6.9 0.0069 Cb medulloblastoma TTTATAAACT (3) 4.6 0.0046 Cb medulloblastoma AAAATACAAA (3) 2.3 0.0023 Cb medulloblastoma GAATTTGGGG 2.3 0.0023 Cb medulloblastoma GTTTATTAAA (7) 2.3 0.0023 Cb medulloblastoma TGTCTGTATG 2.3 0.0023 P8 GC+1d culture GGAGTAAGAA 107.3 0.1073 P8 GC+1d culture TTTCTGTATG 74.2 0.0742 P8 GC+1d culture GTTGTCTTTG (2) 16 0.016 P8 GC+1d culture AAAAGCAAGA (4) 10.3 0.0103 P8 GC+1d culture GCCTCCTGGG (10) 9.1 0.0091 P8 GC+1d culture CCCAAAGACA (5) 8 0.008 P8 GC+1d culture GGTCACACTA (4) 8 0.008 P8 GC+1d culture AAAATACAAA (3) 6.8 0.0068 P8 GC+1d culture TTTATAAACT (3) 4.6 0.0046 P8 GC+1d culture TGGTAGAATG 3.4 0.0034 P8 GC+1d culture GTTTATTAAA (7) 2.3 0.0023 P8 GC+1d culture TTAATTAAGT (5) 2.3 0.0023 P8 GC+1d culture TTTCTTGTTT (7) 2.3 0.0023 P8 GC+1d culture AAAAGCAAAA (2) 1.1 0.0011 P8 GC+1d culture ATGGTGACTC (3) 1.1 0.0011 P8 GC+1d culture GGAGTAAGGA (2) 1.1 0.0011 P8 GC+SHH+1d culture GGAGTAAGAA 106.6 0.1066 P8 GC+SHH+1d culture GTTGTCTTTG (2) 43.3 0.0433 P8 GC+SHH+1d culture TTTCTGTATG 34 0.034 P8 GC+SHH+1d culture TTTATAAACT (3) 12.9 0.0129 P8 GC+SHH+1d culture GGTCACACTA (4) 9.4 0.0094 P8 GC+SHH+1d culture GCCTCCTGGG (10) 8.2 0.0082 P8 GC+SHH+1d culture GTTTATTAAA (7) 8.2 0.0082 P8 GC+SHH+1d culture CCCAAAGACA (5) 5.9 0.0059 P8 GC+SHH+1d culture AAAATACAAA (3) 3.5 0.0035 P8 GC+SHH+1d culture CCCAAGGACA (15) 3.5 0.0035 P8 GC+SHH+1d culture AAAAGCAAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture AAAAGCAAGA (4) 2.3 0.0023 P8 GC+SHH+1d culture ATGGTGACTC (3) 2.3 0.0023 P8 GC+SHH+1d culture TTCACTAACC 2.3 0.0023 P8 GC+SHH+1d culture AAAAGGAAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GAATTTGGGG 1.2 0.0012 P8 GC+SHH+1d culture GGAGTAAGGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGCTCCCCAG (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTTCTGCAT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTTTTAGAAT (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGTAGAATG 1.2 0.0012 P8 GC+SHH+1d culture TTAATTAAGT (5) 1.2 0.0012 P8 GC+SHH+1d culture TTCCTGTATG 1.2 0.0012 P8 GC+SHH+1d culture TTCTGGTGGT (6) 1.2 0.0012 P8 GC+SHH+1d culture TTTTTAATAT 1.2 0.0012 3T3 fibroblasts GGTCACACTA (4) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CCCAAGGACA (15) 7 0.007 3T3 fibroblasts GGAGTAAGAA 7 0.007 3T3 fibroblasts ATGGTGACTC (3) 3.5 0.0035 3T3 fibroblasts GCCTCCTGGG (10) 3.5 0.0035 3T3 fibroblasts TTTCTGTATG 3.5 0.0035 E15 cortex GAATTTGGGG 4.9 0.0049 E15 cortex GCCTCCTGGG (10) 4.9 0.0049 E15 cortex GCTGCCCTTA 4.9 0.0049 E15 cortex GGAGTAAGAA 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TTTCTGTATG 18.2 0.0182 P1 cortex GGAGTAAGAA 13.6 0.0136 P1 cortex GTTGTCTTTG (2) 13.6 0.0136 P1 cortex GGAAGAGGGA (5) 9.1 0.0091 P1 cortex GGTCACACTA (4) 9.1 0.0091 P1 cortex AAAAGCAAGA (4) 4.5 0.0045 P1 cortex GCTGCCCTTA 4.5 0.0045 P1 cortex TGGTAGAATG 4.5 0.0045 P1 cortex TTTCTTGTTT (7) 4.5 0.0045 Hypothalamus GTTGTCTTTG (2) 12.7 0.0127 Hypothalamus GGAGTAAGAA 9.1 0.0091 Hypothalamus GTTTATTAAA (7) 5.4 0.0054 Hypothalamus TTTCTGTATG 5.4 0.0054 Hypothalamus AAAAGCAAGA (4) 3.6 0.0036 Hypothalamus AAAATACAAA (3) 3.6 0.0036 Hypothalamus TTTATAAACT (3) 3.6 0.0036 Hypothalamus TTTTTGTATG 3.6 0.0036 Hypothalamus GGTCACACTA (4) 1.8 0.0018 Hypothalamus TTCACTAACC 1.8 0.0018 Hypothalamus TTCTGGTGGT (6) 1.8 0.0018 E12.5 retina GTTGTCTTTG (2) 52.6 0.0526 E12.5 retina GGAGTAAGAA 35.7 0.0357 E12.5 retina TTTCTGTATG 22.5 0.0225 E12.5 retina ATGATGAGGA (2) 13.1 0.0131 E12.5 retina GCCTCCTGGG (10) 11.3 0.0113 E12.5 retina AAAAGCAAGA (4) 9.4 0.0094 E12.5 retina CCCAAAGACA (5) 7.5 0.0075 E12.5 retina TTTATAAACT (3) 5.6 0.0056 E12.5 retina GGAAGAGGGA (5) 3.8 0.0038 E12.5 retina AAAAGCAAAA (2) 1.9 0.0019 E12.5 retina ATGGTGACTC (3) 1.9 0.0019 E12.5 retina CCCAAGGACA (15) 1.9 0.0019 E12.5 retina GGTCACACTA (4) 1.9 0.0019 E12.5 retina GTTTATTAAA (7) 1.9 0.0019 E12.5 retina GTTTTAGAAT (3) 1.9 0.0019 E12.5 retina TGGTAGAATG 1.9 0.0019 E12.5 retina TTAATTAAGT (5) 1.9 0.0019 E14.5 retina GGAGTAAGAA 56.5 0.0565 E14.5 retina GTTGTCTTTG (2) 34.6 0.0346 E14.5 retina TTTCTGTATG 12.8 0.0128 E14.5 retina GCCTCCTGGG (10) 10.9 0.0109 E14.5 retina TTTCTTGTTT (7) 9.1 0.0091 E14.5 retina ATGGTGACTC (3) 5.5 0.0055 E14.5 retina CCCAAAGACA (5) 5.5 0.0055 E14.5 retina AAAAGCAAGA (4) 3.6 0.0036 E14.5 retina TTAATTAAGT (5) 3.6 0.0036 E14.5 retina TTTATAAACT (3) 3.6 0.0036 E14.5 retina AAAAGGAAAA (3) 1.8 0.0018 E14.5 retina CCCAAGGACA (15) 1.8 0.0018 E14.5 retina GAATTTGGGG 1.8 0.0018 E14.5 retina GGAAGAGGGA (5) 1.8 0.0018 E14.5 retina GTTTATTAAA (7) 1.8 0.0018 E14.5 retina TTCACTAACC 1.8 0.0018 E14.5 retina TTTAATTCAC (3) 1.8 0.0018 E16.5 retina GGAGTAAGAA 94.2 0.0942 E16.5 retina GTTGTCTTTG (2) 34.4 0.0344 E16.5 retina TTTCTGTATG 25.4 0.0254 E16.5 retina TTTATAAACT (3) 10.9 0.0109 E16.5 retina AAAAGCAAGA (4) 9.1 0.0091 E16.5 retina CCCAAAGACA (5) 7.2 0.0072 E16.5 retina GCCTCCTGGG (10) 7.2 0.0072 E16.5 retina ATGGTGACTC (3) 5.4 0.0054 E16.5 retina GGAAGAGGGA (5) 5.4 0.0054 E16.5 retina GTTTATTAAA (7) 3.6 0.0036 E16.5 retina AATCAAGAAA (2) 1.8 0.0018 E16.5 retina GGAGTAAGAC 1.8 0.0018 E16.5 retina GGTCACACTA (4) 1.8 0.0018 E16.5 retina GTTTTAGAAT (3) 1.8 0.0018 E16.5 retina TTTAATTCAC (3) 1.8 0.0018 E16.5 retina TTTCTTGTTT (7) 1.8 0.0018 E18.5 retina GGAGTAAGAA 40 0.04 E18.5 retina TTTCTGTATG 30.9 0.0309 E18.5 retina GTTGTCTTTG (2) 27.3 0.0273 E18.5 retina TTAATTAAGT (5) 7.3 0.0073 E18.5 retina TTTATAAACT (3) 7.3 0.0073 E18.5 retina AAAAGCAAGA (4) 3.6 0.0036 E18.5 retina CCCAAGGACA (15) 3.6 0.0036 E18.5 retina GGAAGAGGGA (5) 3.6 0.0036 E18.5 retina GTTTATTAAA (7) 3.6 0.0036 E18.5 retina GTTTTAGAAT (3) 3.6 0.0036 E18.5 retina ATGATGAGGA (2) 1.8 0.0018 E18.5 retina ATGGTGACTC (3) 1.8 0.0018 E18.5 retina GGAGTAAGAC 1.8 0.0018 E18.5 retina GGCTCCCCAG (4) 1.8 0.0018 E18.5 retina TGTCTGTATG 1.8 0.0018 E18.5 retina TTTCTTGTTT (7) 1.8 0.0018 P0.5 retina GGAGTAAGAA 113.8 0.1138 P0.5 retina TTTCTGTATG 66.7 0.0667 P0.5 retina GGTCACACTA (4) 17.7 0.0177 P0.5 retina GTTGTCTTTG (2) 17.7 0.0177 P0.5 retina TTTATAAACT (3) 17.7 0.0177 P0.5 retina AAAAGCAAGA (4) 11.8 0.0118 P0.5 retina ATGGTGACTC (3) 3.9 0.0039 P0.5 retina CCCAAAGACA (5) 3.9 0.0039 P0.5 retina GCCTCCTGGG (10) 3.9 0.0039 P0.5 retina GGAGTAAGGA (2) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TTCCTGTATG 3.9 0.0039 P0.5 retina AAAAGCAAAA (2) 2 0.002 P0.5 retina AATCAAGAAA (2) 2 0.002 P0.5 retina ATGATGAGGA (2) 2 0.002 P0.5 retina GGCTCCCCAG (4) 2 0.002 P0.5 retina GTTTATTAAA (7) 2 0.002 P0.5 retina GTTTTAGAAT (3) 2 0.002 P0.5 retina TGTCTGTATG 2 0.002 P0.5 retina TTAATTAAGT (5) 2 0.002 P0.5 retina TTTCTTGTTT (7) 2 0.002 P0.5 retina TTTTTGTATG 2 0.002 P2.5 retina GGAGTAAGAA 100.3 0.1003 P2.5 retina TTTCTGTATG 51 0.051 P2.5 retina GTTGTCTTTG (2) 31.7 0.0317 P2.5 retina AAAAGCAAGA (4) 14.1 0.0141 P2.5 retina GGTCACACTA (4) 7 0.007 P2.5 retina TTTATAAACT (3) 7 0.007 P2.5 retina GTTTATTAAA (7) 3.5 0.0035 P2.5 retina TTTCTTGTTT (7) 3.5 0.0035 P2.5 retina CCCAAAGACA (5) 1.8 0.0018 P2.5 retina CCCAAGGACA (15) 1.8 0.0018 P2.5 retina GCCTCCTGGG (10) 1.8 0.0018 P2.5 retina GCTGCCCTTA 1.8 0.0018 P2.5 retina GGAAGAGGGA (5) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGGTAGAATG 1.8 0.0018 P2.5 retina TTAATTAAGT (5) 1.8 0.0018 P2.5 retina TTCACTAACC 1.8 0.0018 P2.5 retina TTTTTAATAT 1.8 0.0018 P4.5 retina GGAGTAAGAA 73.3 0.0733 P4.5 retina GTTGTCTTTG (2) 27.7 0.0277 P4.5 retina TTTCTGTATG 23.8 0.0238 P4.5 retina GTTTATTAAA (7) 7.9 0.0079 P4.5 retina CCCAAGGACA (15) 5.9 0.0059 P4.5 retina GGAAGAGGGA (5) 4 0.004 P4.5 retina TTTATAAACT (3) 4 0.004 P4.5 retina AAAAGCAAGA (4) 2 0.002 P4.5 retina AAAATACAAA (3) 2 0.002 P4.5 retina CCCAAAGACA (5) 2 0.002 P4.5 retina GGAGTAAGAC 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina GTTTCTGCAT (2) 2 0.002 P4.5 retina TGGTAGAATG 2 0.002 P4.5 retina TTAATTAAGT (5) 2 0.002 P4.5 retina TTTTTAATAT 2 0.002 P6.5 retina GGAGTAAGAA 118.4 0.1184 P6.5 retina TTTCTGTATG 66.7 0.0667 P6.5 retina GTTGTCTTTG (2) 26.7 0.0267 P6.5 retina TTTATAAACT (3) 16.7 0.0167 P6.5 retina AAAAGCAAGA (4) 13.3 0.0133 P6.5 retina ATGGTGACTC (3) 5 0.005 P6.5 retina CCCAAAGACA (5) 5 0.005 P6.5 retina GCCTCCTGGG (10) 5 0.005 P6.5 retina TTCACTAACC 5 0.005 P6.5 retina GGTCACACTA (4) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGGTAGAATG 3.3 0.0033 P6.5 retina TTTCTTGTTT (7) 3.3 0.0033 P6.5 retina GAATTTGGGG 1.7 0.0017 P6.5 retina GCTGCCCTTA 1.7 0.0017 P6.5 retina GGAAGAGGGA (5) 1.7 0.0017 P10.5 crx- retina GGAGTAAGAA 169.1 0.1691 P10.5 crx- retina TTTCTGTATG 40.9 0.0409 P10.5 crx- retina GGTCACACTA (4) 14.9 0.0149 P10.5 crx- retina GTTGTCTTTG (2) 13 0.013 P10.5 crx- retina GCCTCCTGGG (10) 11.1 0.0111 P10.5 crx- retina CCCAAAGACA (5) 7.4 0.0074 P10.5 crx- retina AAAAGCAAGA (4) 5.6 0.0056 P10.5 crx- retina TTTATAAACT (3) 5.6 0.0056 P10.5 crx- retina CACAAAGACA (4) 1.9 0.0019 P10.5 crx- retina GGAGTAAGAC 1.9 0.0019 P10.5 crx- retina GTTTATTAAA (7) 1.9 0.0019 P10.5 crx- retina TGGTAGAATG 1.9 0.0019 P10.5 crx- retina TTTCTTGTTT (7) 1.9 0.0019 P10.5 crx+ retina GGAGTAAGAA 61.5 0.0615 P10.5 crx+ retina TTTCTGTATG 21.1 0.0211 P10.5 crx+ retina GTTGTCTTTG (2) 17.3 0.0173 P10.5 crx+ retina TTTATAAACT (3) 17.3 0.0173 P10.5 crx+ retina CCCAAAGACA (5) 9.6 0.0096 P10.5 crx+ retina GCCTCCTGGG (10) 5.8 0.0058 P10.5 crx+ retina GGTCACACTA (4) 5.8 0.0058 P10.5 crx+ retina AAAAGCAAGA (4) 3.8 0.0038 P10.5 crx+ retina AAAATACAAA (3) 1.9 0.0019 P10.5 crx+ retina CACAAAGACA (4) 1.9 0.0019 P10.5 crx+ retina GGAAGAGGGA (5) 1.9 0.0019 P10.5 crx+ retina GGCTCCCCAG (4) 1.9 0.0019 P10.5 crx+ retina TGGTAGAATG 1.9 0.0019 Adult retinal GGAGTAAGAA 38.9 0.0389 Adult retinal TTTCTGTATG 27.8 0.0278 Adult retinal GGTCACACTA (4) 16.7 0.0167 Adult retinal GTTGTCTTTG (2) 13 0.013 Adult retinal AAAAGCAAGA (4) 5.6 0.0056 Adult retinal GCCTCCTGGG (10) 5.6 0.0056 Adult retinal CCCAAAGACA (5) 3.7 0.0037 Adult retinal ATGGTGACTC (3) 1.9 0.0019 Adult retinal CACAAAGACA (4) 1.9 0.0019 Adult retinal CCCAAGGACA (15) 1.9 0.0019 Adult retinal GAATTTGGGG 1.9 0.0019 Adult retinal GGAGTAAGAC 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGGTAGAATG 1.9 0.0019 ONL TTTCTGTATG 36.4 0.0364 ONL GGAGTAAGAA 30.6 0.0306 ONL TTTATAAACT (3) 9.6 0.0096 ONL AAAAGCAAGA (4) 7.7 0.0077 ONL GTTGTCTTTG (2) 7.7 0.0077 ONL GGTCACACTA (4) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TTCACTAACC 3.8 0.0038 ONL AAAAGGAAAA (3) 1.9 0.0019 ONL CACAAAGACA (4) 1.9 0.0019 ONL CCCAAAGACA (5) 1.9 0.0019 ONL GCCTCCTGGG (10) 1.9 0.0019 ONL GTTTCTGCAT (2) 1.9 0.0019 ONL TTCCTGTATG 1.9 0.0019 ONL TTCTGGTGGT (6) 1.9 0.0019 ONL TTTCTTGTTT (7) 1.9 0.0019