Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1761	Clk1	CDC-like kinase 1	1	1 C1.3 (1 30.1 cM)	12747
Gene Ontology	ATP binding | autophosphorylation | nucleus | peptidyl-serine phosphorylation | peptidyl-threonine phosphorylation | peptidyl-tyrosine phosphorylation | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | transferase activity
Human Homolog	CLK1[CDC-like kinase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 13 In Situ Hybridization Images

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SAGE Tags

Total 154 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGAAGCAGC GCCAAACCAA (2) GGGACAGAAC GTAGCTCACA (3) GTTCTCATTT (2) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG TTTTTCTCCT 128.8 0.1288 Cb medulloblastoma ACAAATAAAA GCCAAACCAA (2) GGTACCAATT GTAGCTCACA (3) TATTAATAAA (6) TGGTTGCTGG 189.6 0.1896 P8 GC+1d culture CCCCAACCAG GCCAAACCAA (2) GGTACCAATT GTAGCTCACA (3) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG TTCGGCATCC 106.1 0.1061 P8 GC+SHH+1d culture ACAAATAAAA GAGAAGCAGG GCCAAACCAA (2) GTAGCTCACA (3) GTTCTCATTT (2) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG 120.6 0.1206 3T3 fibroblasts GGCTACGAGC (3) GTAGCTCACA (3) GTCATAGCTG (2) TGGTTGCTGG 248.8 0.2488 E15 cortex GAGAAGCAGC GCCAAACCAA (2) GTAGCTCACA (3) GTCATAGCTG (2) TGGTTGCTGG 341.3 0.3413 P1 cortex ATGGTGCACA GCCAAACCAA (2) GGGACAGAAC GTAGCTCACA (3) TATTAATAAA (6) TGGTTGCTGG 127.1 0.1271 Hypothalamus GCCAAACCAA (2) GTAGCTCACA (3) TATTAATAAA (6) TATTTAATAA TATTTAATTT TGGTTGCTGG TTTTTCTCCT 438.3 0.4383 E12.5 retina AGCTTCTCTT (2) GAGAAGCAGC GCCAAACCAA (2) GGTACCAATT GTAGCTCACA (3) TATTAATAAA (6) TGGTTGCTGG 231 0.231 E14.5 retina ATGGTGCACA GCCAAACCAA (2) GTAGCTCACA (3) TATTAATAAA (6) TATTTAATAA TATTTAATTT TGGTTGCTGG 992.9 0.9929 E16.5 retina AATGAACAAA (4) GCCAAACCAA (2) GGCTACGAGC (3) GGTACCAATT GTAGCTCACA (3) GTTCTCATTT (2) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG 860.3 0.8603 E18.5 retina GCCAAACCAA (2) GGCTACGAGC (3) GGTACCAATT GTAGCTCACA (3) GTTCTCATTT (2) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG 331 0.331 P0.5 retina CCCCAACCAG GCCAAACCAA (2) GTAGCTCACA (3) GTCATAGCTG (2) TATTAATAAA (6) TGGTTGCTGG TTCGGCATCC 245.4 0.2454 P2.5 retina AATGAACAAA (4) ATAGCAAGGA ATGGTGCACA GCCAAACCAA (2) GGTACCAATT GTAGCTCACA (3) GTCATAGCTG (2) TATTAATAAA (6) TATTTAATAA TATTTAATTT TGGTTGCTGG 243.2 0.2432 P4.5 retina ACAAATAAAA AGCTTCTCTT (2) GCCAAACCAA (2) GTAGCTCACA (3) GTCATAGCTG (2) GTTCTCATTT (2) TATTAATAAA (6) TATTTAATAA TATTTAATTT TGGTTGCTGG 243.9 0.2439 P6.5 retina AATGAACAAA (4) ATAGCAAGGA ATGGTGCACA GCCAAACCAA (2) GTAGCTCACA (3) GTCATAGCTG (2) GTTCTCATTT (2) TATTAATAAA (6) TGGTTGCTGG TTTTTCTCCT 230 0.23 P10.5 crx- retina AATGAACAAA (4) AGCTTCTCTT (2) GCCAAACCAA (2) GTAGCTCACA (3) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG 353 0.353 P10.5 crx+ retina ATAGCAAGGA ATGGTGCACA GCCAAACCAA (2) GTAGCTCACA (3) TATTAATAAA (6) TGGTTGCTGG TTCGGCATCC 213.3 0.2133 Adult retinal CCCCAACCAG GAGAAGCAGC GAGAAGCAGG GCCAAACCAA (2) GTAGCTCACA (3) GTCATAGCTG (2) GTTCTCATTT (2) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG 279.9 0.2799 ONL ATGGTGCACA GAGAAGCAGG GCCAAACCAA (2) GTAGCTCACA (3) GTCATAGCTG (2) TATTAATAAA (6) TATTTAATTT TGGTTGCTGG 484.5 0.4845