Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2108	Ttr	transthyretin	18	18 A2 (18 7.0 cM)	22139
Gene Ontology	carrier activity | extracellular space | hormone activity | retinol binding | steroid binding | thyroid hormone generation | transport
Human Homolog	TTR[transthyretin (prealbumin, amyloidosis type I)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 4 In Situ Hybridization Images

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SAGE Tags

Total 186 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGACTCAGA (2) AATTCGCGGA AGAATACATA (2) CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GAACGGGGAA GCAGCCCTGT (2) GCCCCCACAC GCTGATCCGG TACATATCCT TACCCTTGCC TGCAAAAAAA (2) TTCAAAAGCC TTTTTTTTTT (2) 314.8 0.3148 Cb medulloblastoma AATTCGCGGA CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GAACGGGGAA TACCCTTGCC TGCAAAAAAA (2) TTCAAAAGCC TTGTACAAAA (2) TTTTTTTTTT (2) 252 0.252 P8 GC+1d culture AATTCGCGGA CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GAACGGGGAA GGAAGCCCTT TACATATCCT TACCCTTGCC TGCAAAAAAA (2) TTCAAAAGCC TTTTTTTTTT (2) 608.4 0.6084 P8 GC+SHH+1d culture AATTCGCGGA CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GAACGGGGAA GCAGCCCTGT (2) GCTGATCCGG GGAAGCCCTT GGTCAAAAAA TACCCTTGCC TGCAAAAAAA (2) TTCAAAAGCC TTTTTTTTTT (2) 424 0.424 3T3 fibroblasts AAGACTCAGA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GCTGTCGTCA (2) TACCCTTGCC 122.6 0.1226 E15 cortex AAGACTCAGA (2) CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) GCTGTCGTCA (2) GGAAGCCCTT GGTCAAAAAA TTTTTTTTTT (2) 133.4 0.1334 P1 cortex AATTCGCGGA CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) TACCCTTGCC TTCAAAAGCC TTTTTTTTTT (2) 95.2 0.0952 Hypothalamus AATTCGCGGA CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) GAACGGGGAA GCTGTCGTCA (2) TACCCTTGCC TGCAAAAAAA (2) TTCAAAAGCC TTGTACAAAA (2) TTTTTTTTTT (2) 197.2 0.1972 E12.5 retina CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) TACCCTTGCC TCTAATTTTC (2) TGCAAAAAAA (2) TTTTTTTTTT (2) 101.4 0.1014 E14.5 retina CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GAAACCAGGC (2) GCTGATCCGG GGTCAAAAAA TACCCTTGCC TCTAATTTTC (2) TGCAAAAAAA (2) TTTTTTTTTT (2) 85.5 0.0855 E16.5 retina CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) GAAACCAGGC (2) GCTGATCCGG GGAAGCCCTT TACCCTTGCC TGCAAAAAAA (2) TTTTTTTTTT (2) 77.8 0.0778 E18.5 retina CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GGTCAAAAAA TACCCTTGCC TGCAAAAAAA (2) TTTTTTTTTT (2) 125.4 0.1254 P0.5 retina CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) TACCCTTGCC TCTAATTTTC (2) TGCAAAAAAA (2) TTTTTTTTTT (2) 184.6 0.1846 P2.5 retina AATTCGCGGA CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) TACCCTTGCC TGCAAAAAAA (2) TTCAAAAGCC TTTTTTTTTT (2) 119.6 0.1196 P4.5 retina CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) GAAACCAGGC (2) GCTGATCCGG GGTCAAAAAA TACCCTTGCC TGCAAAAAAA (2) TTTTTTTTTT (2) 83.2 0.0832 P6.5 retina AATTCGCGGA CAAAAAAAAA (2) CACCCCCCAC (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GGAAGCCCTT TACCCTTGCC TGCAAAAAAA (2) TTTTTTTTTT (2) 103.4 0.1034 P10.5 crx- retina AAGACTCAGA (2) AATTCGCGGA CAAAAAAAAA (2) CAGTTGCTTA CCTTTCCCTT CTCCTGCAGC (2) GAACGGGGAA GCAGCCCTGT (2) GCTGATCCGG TACCCTTGCC 91.1 0.0911 P10.5 crx+ retina AATTCGCGGA CAAAAAAAAA (2) CCTTTCCCTT CTCCTGCAGC (2) GAAACCAGGC (2) TACCCTTGCC TGCAAAAAAA (2) TTTTTTTTTT (2) 86.4 0.0864 Adult retinal AATTCGCGGA CAAAAAAAAA (2) CACCCCCCAC (2) CCTTTCCCTT CTCCTGCAGC (2) TGCAAAAAAA (2) TTTTTTTTTT (2) 53.8 0.0538 ONL AATTCGCGGA AGAATACATA (2) CAAAAAAAAA (2) TGCAAAAAAA (2) TTTTTTTTTT (2) 32.5 0.0325