Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.100117	4930528A17Rik	RIKEN cDNA 4930528A17 gene	4		67735
Mm.100117	5730406M06Rik	RIKEN cDNA 5730406M06 gene	4		66625
Human Homolog	C6orf111[chromosome 6 open reading frame 111]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 11 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 125 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC TGGTTGTTGG (20) 3.3 0.0033 P8 Cb GC AAAAATTAAA (5) 1.6 0.0016 P8 Cb GC AAAAGATCTA (11) 1.6 0.0016 P8 Cb GC AGTTTAAGGG (3) 1.6 0.0016 P8 Cb GC GATGCCACCA (5) 1.6 0.0016 P8 Cb GC TTTACCAAAA (4) 1.6 0.0016 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma TAATTTTGGA (6) 4.6 0.0046 Cb medulloblastoma AAAAATTAAA (5) 2.3 0.0023 Cb medulloblastoma GATGCCACCA (5) 2.3 0.0023 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture TTTACCAAAA (4) 5.7 0.0057 P8 GC+1d culture AGTTTAAGGG (3) 2.3 0.0023 P8 GC+1d culture TGGTTGTTGG (20) 2.3 0.0023 P8 GC+1d culture TTAATTTGTG (4) 2.3 0.0023 P8 GC+1d culture AAAAGATCTA (11) 1.1 0.0011 P8 GC+1d culture TGATGGATTG (4) 1.1 0.0011 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture AGTTTAAGGG (3) 4.7 0.0047 P8 GC+SHH+1d culture GGGCTGCTTT (4) 1.2 0.0012 P8 GC+SHH+1d culture TAATTTTGGA (6) 1.2 0.0012 P8 GC+SHH+1d culture TGGTTGTTGG (20) 1.2 0.0012 3T3 fibroblasts GGGCTGCTTT (4) 7 0.007 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts AAAAGATCTA (11) 3.5 0.0035 3T3 fibroblasts AGTTTAAGGG (3) 3.5 0.0035 3T3 fibroblasts GATGCCACCA (5) 3.5 0.0035 3T3 fibroblasts TGATGGATTG (4) 3.5 0.0035 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex AGTTTAAGGG (3) 4.9 0.0049 E15 cortex GGGCTGCTTT (4) 4.9 0.0049 E15 cortex GGGGAAGGCG (13) 4.9 0.0049 E15 cortex TGGTTGTTGG (20) 4.9 0.0049 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex GGGCTGCTTT (4) 9.1 0.0091 P1 cortex TGGTTGTTGG (20) 9.1 0.0091 P1 cortex AGTTTAAGGG (3) 4.5 0.0045 P1 cortex GATGCCACCA (5) 4.5 0.0045 P1 cortex GCTAGTGAAC (3) 4.5 0.0045 P1 cortex TGATGGATTG (4) 4.5 0.0045 P1 cortex TTAATTTGTG (4) 4.5 0.0045 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus TGGTTGTTGG (20) 19.9 0.0199 Hypothalamus TTTACCAAAA (4) 3.6 0.0036 Hypothalamus TGATGGATTG (4) 1.8 0.0018 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina GATTTCTACT (6) 16.9 0.0169 E12.5 retina TGGTTGTTGG (20) 5.6 0.0056 E12.5 retina AGTTTAAGGG (3) 3.8 0.0038 E12.5 retina TTTACCAAAA (4) 3.8 0.0038 E12.5 retina AAAAGATCTA (11) 1.9 0.0019 E12.5 retina CAAAGAGAAA (3) 1.9 0.0019 E12.5 retina GATGCCACCA (5) 1.9 0.0019 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina TGGTTGTTGG (20) 38.3 0.0383 E14.5 retina AAAAGATCTA (11) 7.3 0.0073 E14.5 retina GGAATTTTCA (5) 3.6 0.0036 E14.5 retina GGGGAAGGCG (13) 1.8 0.0018 E14.5 retina TTTACCAAAA (4) 1.8 0.0018 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina TGGTTGTTGG (20) 16.3 0.0163 E16.5 retina GATTTCTACT (6) 1.8 0.0018 E16.5 retina GGGGAAGGCG (13) 1.8 0.0018 E16.5 retina TTTACCAAAA (4) 1.8 0.0018 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina TGGTTGTTGG (20) 5.5 0.0055 E18.5 retina TTTACCAAAA (4) 5.5 0.0055 E18.5 retina AGTTTAAGGG (3) 3.6 0.0036 E18.5 retina GGGCTGCTTT (4) 1.8 0.0018 P0.5 retina GATTTCTACT (6) 82.4 0.0824 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina AGTTTAAGGG (3) 7.9 0.0079 P0.5 retina GGGCTGCTTT (4) 5.9 0.0059 P0.5 retina TTTACCAAAA (4) 3.9 0.0039 P0.5 retina CAAAGAGAAA (3) 2 0.002 P0.5 retina GATGCCACCA (5) 2 0.002 P0.5 retina GGGGAAGGCG (13) 2 0.002 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina TGGTTGTTGG (20) 7 0.007 P2.5 retina TTTACCAAAA (4) 7 0.007 P2.5 retina AGTTTAAGGG (3) 5.3 0.0053 P2.5 retina GGAATTTTCA (5) 1.8 0.0018 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina AGTTTAAGGG (3) 11.9 0.0119 P4.5 retina TGGTTGTTGG (20) 11.9 0.0119 P4.5 retina TTTACCAAAA (4) 11.9 0.0119 P4.5 retina GGGCTGCTTT (4) 4 0.004 P4.5 retina GCTAGTGAAC (3) 2 0.002 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina AGTTTAAGGG (3) 11.7 0.0117 P6.5 retina TTTACCAAAA (4) 8.3 0.0083 P6.5 retina TGGTTGTTGG (20) 5 0.005 P6.5 retina CCTAACACCT (2) 1.7 0.0017 P6.5 retina GGGCTGCTTT (4) 1.7 0.0017 P6.5 retina GGGGAAGGCG (13) 1.7 0.0017 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina GATTTCTACT (6) 7.4 0.0074 P10.5 crx- retina TGGTTGTTGG (20) 7.4 0.0074 P10.5 crx- retina AAAAGATCTA (11) 1.9 0.0019 P10.5 crx- retina AGTTTAAGGG (3) 1.9 0.0019 P10.5 crx- retina CCTAACACCT (2) 1.9 0.0019 P10.5 crx- retina GCTAGTGAAC (3) 1.9 0.0019 P10.5 crx- retina TTTACCAAAA (4) 1.9 0.0019 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina AGTTTAAGGG (3) 9.6 0.0096 P10.5 crx+ retina GATTTCTACT (6) 7.7 0.0077 P10.5 crx+ retina TTTACCAAAA (4) 5.8 0.0058 P10.5 crx+ retina CCTAACACCT (2) 3.8 0.0038 P10.5 crx+ retina TGGTTGTTGG (20) 3.8 0.0038 P10.5 crx+ retina GATGCCACCA (5) 1.9 0.0019 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal TGGTTGTTGG (20) 7.4 0.0074 Adult retinal GGGCTGCTTT (4) 3.7 0.0037 Adult retinal TTTACCAAAA (4) 3.7 0.0037 Adult retinal AGTTTAAGGG (3) 1.9 0.0019 Adult retinal CCTAACACCT (2) 1.9 0.0019 Adult retinal GGGGAAGGCG (13) 1.9 0.0019 Adult retinal TTAATTTGTG (4) 1.9 0.0019 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL TGGTTGTTGG (20) 11.5 0.0115 ONL CAAAGAGAAA (3) 5.7 0.0057 ONL AAAAATTAAA (5) 3.8 0.0038 ONL AGTTTAAGGG (3) 3.8 0.0038 ONL GCTAGTGAAC (3) 1.9 0.0019