Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.213943
2700038C09Rik
RIKEN cDNA 2700038C09 gene
2
66496
Mm.213943
C330003G01Rik
RIKEN cDNA C330003G01 gene
2
320694
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 45 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAGCAGCAGC
(
8
)
4.9
0.0049
P8 Cb GC
TCTCCCGAAA (
4
)
4.9
0.0049
P8 Cb GC
GCAGCCATCC
(
2
)
3.3
0.0033
Cb medulloblastoma
TCTCCCGAAA (
4
)
23.1
0.0231
Cb medulloblastoma
AAGCAGCAGC
(
8
)
9.2
0.0092
P8 GC+1d culture
TCTCCCGAAA (
4
)
19.4
0.0194
P8 GC+1d culture
AAGCAGCAGC
(
8
)
10.3
0.0103
P8 GC+1d culture
GGCATCTCCA
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
TCTCCCGAAA (
4
)
18.7
0.0187
P8 GC+SHH+1d culture
AAGCAGCAGC
(
8
)
8.2
0.0082
P8 GC+SHH+1d culture
GCAGCCATCC
(
2
)
1.2
0.0012
3T3 fibroblasts
AAGCAGCAGC
(
8
)
14
0.014
3T3 fibroblasts
TCTCCCGAAA (
4
)
3.5
0.0035
E15 cortex
AAGCAGCAGC
(
8
)
29.7
0.0297
E15 cortex
TCTCCCGAAA (
4
)
9.9
0.0099
P1 cortex
AAGCAGCAGC
(
8
)
18.2
0.0182
P1 cortex
GCAGCCATCC
(
2
)
4.5
0.0045
Hypothalamus
TCTCCCGAAA (
4
)
25.4
0.0254
Hypothalamus
AAGCAGCAGC
(
8
)
5.4
0.0054
E12.5 retina
AAGCAGCAGC
(
8
)
15
0.015
E12.5 retina
TCTCCCGAAA (
4
)
9.4
0.0094
E14.5 retina
TCTCCCGAAA (
4
)
9.1
0.0091
E14.5 retina
AAGCAGCAGC
(
8
)
1.8
0.0018
E14.5 retina
GCAGCCATCC
(
2
)
1.8
0.0018
E16.5 retina
TCTCCCGAAA (
4
)
18.1
0.0181
E16.5 retina
AAGCAGCAGC
(
8
)
12.7
0.0127
E16.5 retina
GGCATCTCCA
(
2
)
1.8
0.0018
E18.5 retina
TCTCCCGAAA (
4
)
32.7
0.0327
E18.5 retina
AAGCAGCAGC
(
8
)
5.5
0.0055
P0.5 retina
AAGCAGCAGC
(
8
)
11.8
0.0118
P0.5 retina
TCTCCCGAAA (
4
)
11.8
0.0118
P2.5 retina
AAGCAGCAGC
(
8
)
15.8
0.0158
P2.5 retina
TCTCCCGAAA (
4
)
8.8
0.0088
P4.5 retina
TCTCCCGAAA (
4
)
11.9
0.0119
P6.5 retina
TCTCCCGAAA (
4
)
15
0.015
P6.5 retina
AAGCAGCAGC
(
8
)
5
0.005
P10.5 crx- retina
AAGCAGCAGC
(
8
)
20.4
0.0204
P10.5 crx- retina
TCTCCCGAAA (
4
)
7.4
0.0074
P10.5 crx+ retina
TCTCCCGAAA (
4
)
17.3
0.0173
P10.5 crx+ retina
AAGCAGCAGC
(
8
)
5.8
0.0058
Adult retinal
AAGCAGCAGC
(
8
)
7.4
0.0074
Adult retinal
TCTCCCGAAA (
4
)
7.4
0.0074
Adult retinal
GGCATCTCCA
(
2
)
1.9
0.0019
ONL
TCTCCCGAAA (
4
)
3.8
0.0038
ONL
AAGCAGCAGC
(
8
)
1.9
0.0019
