Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.261037
1700003B17Rik
RIKEN cDNA 1700003B17 gene
1
69346
Mm.261037
4732493F09Rik
RIKEN cDNA 4732493F09 gene
1
1 E3
226407
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 5 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 60 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTCCAGGTT (
4
)
3.3
0.0033
P8 Cb GC
GAGGGCTGAA
(
4
)
3.3
0.0033
Cb medulloblastoma
AGGGGCCAGA
(
5
)
11.6
0.0116
Cb medulloblastoma
CAGTTAGTGA
(
2
)
2.3
0.0023
Cb medulloblastoma
TGCTCTGCCT (
20
)
2.3
0.0023
P8 GC+1d culture
TGCTCTGCCT (
20
)
10.3
0.0103
P8 GC+1d culture
AGGGGCCAGA
(
5
)
2.3
0.0023
P8 GC+1d culture
CCTCCAGGTT (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
TGCTCTGCCT (
20
)
9.4
0.0094
P8 GC+SHH+1d culture
CCTCCAGGTT (
4
)
4.7
0.0047
P8 GC+SHH+1d culture
AGGGGCCAGA
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
CAGTTAGTGA
(
2
)
1.2
0.0012
3T3 fibroblasts
AGGGGCCAGA
(
5
)
7
0.007
3T3 fibroblasts
CAGTTAGTGA
(
2
)
3.5
0.0035
3T3 fibroblasts
CCTCCAGGTT (
4
)
3.5
0.0035
3T3 fibroblasts
TGCTCTGCCT (
20
)
3.5
0.0035
E15 cortex
TGCTCTGCCT (
20
)
4.9
0.0049
P1 cortex
TGCTCTGCCT (
20
)
22.7
0.0227
Hypothalamus
AGGGGCCAGA
(
5
)
9.1
0.0091
Hypothalamus
TGCTCTGCCT (
20
)
7.2
0.0072
Hypothalamus
CCTCCAGGTT (
4
)
5.4
0.0054
Hypothalamus
GCCGACACGG (
4
)
1.8
0.0018
E12.5 retina
AGGGGCCAGA
(
5
)
3.8
0.0038
E12.5 retina
CAGTTAGTGA
(
2
)
1.9
0.0019
E12.5 retina
CCTCCAGGTT (
4
)
1.9
0.0019
E12.5 retina
TGCTCTGCCT (
20
)
1.9
0.0019
E14.5 retina
CCTCCAGGTT (
4
)
1.8
0.0018
E14.5 retina
TGCTCTGCCT (
20
)
1.8
0.0018
E16.5 retina
GCCGACACGG (
4
)
5.4
0.0054
E16.5 retina
TGCTCTGCCT (
20
)
3.6
0.0036
E16.5 retina
ATTACGCCAA (
233
)
1.8
0.0018
E16.5 retina
CCTCCAGGTT (
4
)
1.8
0.0018
E18.5 retina
TGCTCTGCCT (
20
)
5.5
0.0055
E18.5 retina
GCCGACACGG (
4
)
1.8
0.0018
P0.5 retina
TGCTCTGCCT (
20
)
3.9
0.0039
P0.5 retina
AGGGGCCAGA
(
5
)
2
0.002
P0.5 retina
ATTACGCCAA (
233
)
2
0.002
P0.5 retina
CAGTTAGTGA
(
2
)
2
0.002
P2.5 retina
TGCTCTGCCT (
20
)
10.6
0.0106
P2.5 retina
CCTCCAGGTT (
4
)
1.8
0.0018
P4.5 retina
TGCTCTGCCT (
20
)
9.9
0.0099
P4.5 retina
CCTCCAGGTT (
4
)
4
0.004
P6.5 retina
AGGGGCCAGA
(
5
)
5
0.005
P6.5 retina
CCTCCAGGTT (
4
)
3.3
0.0033
P6.5 retina
TGCTCTGCCT (
20
)
3.3
0.0033
P10.5 crx- retina
CCTCCAGGTT (
4
)
7.4
0.0074
P10.5 crx- retina
TGCTCTGCCT (
20
)
3.7
0.0037
P10.5 crx- retina
AGGGGCCAGA
(
5
)
1.9
0.0019
P10.5 crx- retina
GCCGACACGG (
4
)
1.9
0.0019
P10.5 crx+ retina
TGCTCTGCCT (
20
)
23.1
0.0231
P10.5 crx+ retina
CCTCCAGGTT (
4
)
13.5
0.0135
P10.5 crx+ retina
AGGGGCCAGA
(
5
)
1.9
0.0019
P10.5 crx+ retina
GAGGGCTGAA
(
4
)
1.9
0.0019
Adult retinal
TGCTCTGCCT (
20
)
16.7
0.0167
Adult retinal
AGGGGCCAGA
(
5
)
7.4
0.0074
Adult retinal
CCTCCAGGTT (
4
)
5.6
0.0056
Adult retinal
ATTACGCCAA (
233
)
3.7
0.0037
Adult retinal
CAGTTAGTGA
(
2
)
3.7
0.0037
ONL
AGGGGCCAGA
(
5
)
3.8
0.0038
ONL
CCTCCAGGTT (
4
)
1.9
0.0019
