Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28052	Ubp1	upstream binding protein 1	9		22221
Gene Ontology	angiogenesis
Human Homolog	UBP1[upstream binding protein 1 (LBP-1a)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 93 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCACCAGCAG (5) 3.3 0.0033 P8 Cb GC ATTTATGGAA (5) 1.6 0.0016 P8 Cb GC GAGGTGAAAA (3) 1.6 0.0016 P8 Cb GC TGGGTTCCTT (4) 1.6 0.0016 Cb medulloblastoma ATTTATGGAA (5) 4.6 0.0046 Cb medulloblastoma GCACCAGCAG (5) 2.3 0.0023 Cb medulloblastoma TGGGTTCCTT (4) 2.3 0.0023 P8 GC+1d culture GCACCAGCAG (5) 3.4 0.0034 P8 GC+1d culture TGGTCACACA (6) 2.3 0.0023 P8 GC+1d culture AGATCCAGAA (3) 1.1 0.0011 P8 GC+1d culture ATTTATGGAA (5) 1.1 0.0011 P8 GC+1d culture TGGGTTCCTT (4) 1.1 0.0011 P8 GC+SHH+1d culture GCACCAGCAG (5) 7 0.007 P8 GC+SHH+1d culture AGCAGAAAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture ATTTATGGAA (5) 1.2 0.0012 P8 GC+SHH+1d culture GAGGTGGAAA (11) 1.2 0.0012 3T3 fibroblasts GCACCAGCAG (5) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex AGATCCAAAA (8) 4.9 0.0049 E15 cortex GCACCAGCAG (5) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGGGTTCCTT (4) 4.9 0.0049 P1 cortex TGGGTTCCTT (4) 9.1 0.0091 P1 cortex GAGGTGAAAA (3) 4.5 0.0045 Hypothalamus GCACCAGCAG (5) 10.9 0.0109 Hypothalamus ATTTATGGAA (5) 3.6 0.0036 Hypothalamus GAGGTGGAAA (11) 3.6 0.0036 Hypothalamus GAGGTGAAAA (3) 1.8 0.0018 E12.5 retina ATTTATGGAA (5) 7.5 0.0075 E12.5 retina GCACCAGCAG (5) 7.5 0.0075 E12.5 retina GAGGTGGAAA (11) 3.8 0.0038 E12.5 retina AGATCCAAAA (8) 1.9 0.0019 E14.5 retina GCACCAGCAG (5) 7.3 0.0073 E14.5 retina ATTTATGGAA (5) 5.5 0.0055 E14.5 retina CTTAAAAGTG (7) 1.8 0.0018 E14.5 retina GAGGTGGAAA (11) 1.8 0.0018 E14.5 retina GGCCAGGTAT (3) 1.8 0.0018 E16.5 retina GCACCAGCAG (5) 12.7 0.0127 E16.5 retina ATTTATGGAA (5) 7.2 0.0072 E16.5 retina GAGGTGGAAA (11) 3.6 0.0036 E16.5 retina AGATCCAAAA (8) 1.8 0.0018 E16.5 retina AGATCGAAAA (2) 1.8 0.0018 E16.5 retina TGGGTTCCTT (4) 1.8 0.0018 E16.5 retina TGGTCACACA (6) 1.8 0.0018 E18.5 retina GCACCAGCAG (5) 16.4 0.0164 E18.5 retina ATTTATGGAA (5) 3.6 0.0036 E18.5 retina AGATCCAAAA (8) 1.8 0.0018 E18.5 retina AGCAGAAAAA (4) 1.8 0.0018 E18.5 retina CTTAAAAGTG (7) 1.8 0.0018 E18.5 retina GAGGTGGAAA (11) 1.8 0.0018 E18.5 retina GGCCAGGTAT (3) 1.8 0.0018 P0.5 retina AGATCGAAAA (2) 3.9 0.0039 P0.5 retina GCACCAGCAG (5) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AGATCCAAAA (8) 2 0.002 P0.5 retina ATTTATGGAA (5) 2 0.002 P0.5 retina GAGGTGAAAA (3) 2 0.002 P0.5 retina GAGGTGGAAA (11) 2 0.002 P2.5 retina GCACCAGCAG (5) 21.1 0.0211 P2.5 retina ATTTATGGAA (5) 12.3 0.0123 P2.5 retina GAGGTGGAAA (11) 8.8 0.0088 P2.5 retina AGATCCAAAA (8) 1.8 0.0018 P2.5 retina AGCAGAAAAA (4) 1.8 0.0018 P2.5 retina GAGGTGAAAA (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GCACCAGCAG (5) 19.8 0.0198 P4.5 retina ATTTATGGAA (5) 5.9 0.0059 P4.5 retina GAGGTGGAAA (11) 5.9 0.0059 P4.5 retina CTTAAAAGTG (7) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GCACCAGCAG (5) 18.3 0.0183 P6.5 retina ATTTATGGAA (5) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AGATCCAAAA (8) 1.7 0.0017 P6.5 retina AGATCCAGAA (3) 1.7 0.0017 P6.5 retina AGATCGAAAA (2) 1.7 0.0017 P6.5 retina GAGGTGAAAA (3) 1.7 0.0017 P6.5 retina GAGGTGGAAA (11) 1.7 0.0017 P10.5 crx- retina GCACCAGCAG (5) 22.3 0.0223 P10.5 crx- retina AGATCGAAAA (2) 3.7 0.0037 P10.5 crx- retina GAGGTGGAAA (11) 3.7 0.0037 P10.5 crx- retina ATTTATGGAA (5) 1.9 0.0019 P10.5 crx+ retina GCACCAGCAG (5) 17.3 0.0173 P10.5 crx+ retina ATTTATGGAA (5) 5.8 0.0058 P10.5 crx+ retina CTTAAAAGTG (7) 1.9 0.0019 P10.5 crx+ retina GGCCAGGTAT (3) 1.9 0.0019 Adult retinal GCACCAGCAG (5) 7.4 0.0074 Adult retinal ATTTATGGAA (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL GCACCAGCAG (5) 9.6 0.0096 ONL GTCATAGCTG (590) 5.7 0.0057 ONL ATTTATGGAA (5) 3.8 0.0038 ONL AGATCCAGAA (3) 1.9 0.0019