Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.289306	Arpc4	actin related protein 2/3 complex, subunit 4	6		68089
Gene Ontology	actin filament polymerization | Arp2/3 protein complex | cytoskeleton | molecular_function unknown
Human Homolog	ARPC4[actin related protein 2/3 complex, subunit 4, 20kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 91 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AGAAAAAAAA (47) 17.9 0.0179 P8 Cb GC CTCGCTGTCT 4.9 0.0049 P8 Cb GC GGAGCAGAGG (7) 3.3 0.0033 P8 Cb GC TGTCTGCTCT (3) 3.3 0.0033 P8 Cb GC AAAAAGAAAA (19) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AGAAAAAAAA (47) 53.2 0.0532 Cb medulloblastoma CTCGCTGTCT 11.6 0.0116 Cb medulloblastoma AAAAAGAAAA (19) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GGAGCAGAGG (7) 9.1 0.0091 P8 GC+1d culture AGAAAAAAAA (47) 8 0.008 P8 GC+1d culture CTCGCTGTCT 3.4 0.0034 P8 GC+1d culture AAAAAGAAAA (19) 1.1 0.0011 P8 GC+1d culture TGTCTGCTCT (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGAAAAAAAA (47) 14.1 0.0141 P8 GC+SHH+1d culture CTCGCTGTCT 7 0.007 P8 GC+SHH+1d culture TGTCTGCTCT (3) 5.9 0.0059 P8 GC+SHH+1d culture GGAGCAGAGG (7) 4.7 0.0047 P8 GC+SHH+1d culture AAAAAGAAAA (19) 2.3 0.0023 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GGAGCAGAGG (7) 14 0.014 3T3 fibroblasts AGAAAAAAAA (47) 3.5 0.0035 3T3 fibroblasts TGTCTGCTCT (3) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AGAAAAAAAA (47) 14.8 0.0148 E15 cortex CTCGCTGTCT 9.9 0.0099 E15 cortex GGAGCAGAGG (7) 4.9 0.0049 E15 cortex TGTCTGCTCT (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGAAAAAAAA (47) 9.1 0.0091 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AGAAAAAAAA (47) 32.6 0.0326 Hypothalamus CTCGCTGTCT 3.6 0.0036 Hypothalamus GGAGCAGAGG (7) 3.6 0.0036 Hypothalamus TGTCTGCTCT (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AGAAAAAAAA (47) 20.7 0.0207 E12.5 retina GGAGCAGAGG (7) 3.8 0.0038 E12.5 retina CTCGCTGTCT 1.9 0.0019 E12.5 retina TGTCTGCTCT (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGAAAAAAAA (47) 20 0.02 E14.5 retina GGAGCAGAGG (7) 7.3 0.0073 E14.5 retina CTCGCTGTCT 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AGAAAAAAAA (47) 10.9 0.0109 E16.5 retina GGAGCAGAGG (7) 5.4 0.0054 E16.5 retina AAAAAGAAAA (19) 1.8 0.0018 E16.5 retina CTCGCTGTCT 1.8 0.0018 E16.5 retina TGTCTGCTCT (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AGAAAAAAAA (47) 29.1 0.0291 E18.5 retina CTCGCTGTCT 7.3 0.0073 E18.5 retina TGTCTGCTCT (3) 3.6 0.0036 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGAAAAAAAA (47) 13.7 0.0137 P0.5 retina GGAGCAGAGG (7) 9.8 0.0098 P0.5 retina AAAAAGAAAA (19) 3.9 0.0039 P0.5 retina CTCGCTGTCT 3.9 0.0039 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AGAAAAAAAA (47) 17.6 0.0176 P2.5 retina TGTCTGCTCT (3) 7 0.007 P2.5 retina AAAAAGAAAA (19) 3.5 0.0035 P2.5 retina GGAGCAGAGG (7) 3.5 0.0035 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGAAAAAAAA (47) 31.7 0.0317 P4.5 retina AAAAAGAAAA (19) 4 0.004 P4.5 retina GGAGCAGAGG (7) 4 0.004 P4.5 retina CTCGCTGTCT 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AGAAAAAAAA (47) 13.3 0.0133 P6.5 retina CTCGCTGTCT 3.3 0.0033 P6.5 retina GGAGCAGAGG (7) 3.3 0.0033 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AGAAAAAAAA (47) 7.4 0.0074 P10.5 crx- retina GGAGCAGAGG (7) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AGAAAAAAAA (47) 5.8 0.0058 P10.5 crx+ retina CTCGCTGTCT 1.9 0.0019 P10.5 crx+ retina GGAGCAGAGG (7) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GGAGCAGAGG (7) 9.3 0.0093 Adult retinal AGAAAAAAAA (47) 5.6 0.0056 Adult retinal CTCGCTGTCT 5.6 0.0056 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AGAAAAAAAA (47) 19.2 0.0192 ONL AAAAAGAAAA (19) 3.8 0.0038 ONL GGAGCAGAGG (7) 1.9 0.0019