Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.32002	Vars2l	valyl-tRNA synthetase 2-like	17		68915
Gene Ontology	ATP binding | ligase activity | tRNA aminoacylation for protein translation | tRNA ligase activity
Human Homolog	VARS2L[valyl-tRNA synthetase 2-like]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTACTGGCCA (3) 3.3 0.0033 P8 Cb GC AGCTGAGCCG (3) 1.6 0.0016 P8 Cb GC GGCCTGCCCC (6) 1.6 0.0016 P8 Cb GC TCAGAGGGTC (2) 1.6 0.0016 Cb medulloblastoma AGCTGAGCCG (3) 9.2 0.0092 Cb medulloblastoma GTACTGGCCA (3) 4.6 0.0046 Cb medulloblastoma CAAGGGGAGG (3) 2.3 0.0023 Cb medulloblastoma GACCCCATTC (2) 2.3 0.0023 Cb medulloblastoma GGTGGGGGAG (7) 2.3 0.0023 P8 GC+1d culture AGCTGAGCCG (3) 2.3 0.0023 P8 GC+SHH+1d culture AGCTGAGCCG (3) 1.2 0.0012 P8 GC+SHH+1d culture GTACTGGCCA (3) 1.2 0.0012 3T3 fibroblasts GTACTGGCCA (3) 21 0.021 3T3 fibroblasts AGCTGAGCCG (3) 3.5 0.0035 3T3 fibroblasts CAAGGGGAGG (3) 3.5 0.0035 3T3 fibroblasts GGGGGGAGGA (4) 3.5 0.0035 E15 cortex GACCACCTTC 4.9 0.0049 E15 cortex GTACTGGCCA (3) 4.9 0.0049 P1 cortex GACCACCTTC 4.5 0.0045 Hypothalamus GGTGGGGGAG (7) 3.6 0.0036 Hypothalamus GTACTGGCCA (3) 3.6 0.0036 E12.5 retina CAAGGGGAGG (3) 1.9 0.0019 E12.5 retina GGCCTGCCCC (6) 1.9 0.0019 E14.5 retina GGCCTGCCCC (6) 3.6 0.0036 E14.5 retina AGCTGAGCCG (3) 1.8 0.0018 E14.5 retina CAAGGGGAGG (3) 1.8 0.0018 E16.5 retina CAAGGGGAGG (3) 3.6 0.0036 E16.5 retina TCAGAGGGTC (2) 3.6 0.0036 E16.5 retina AGCTGAGCCG (3) 1.8 0.0018 E16.5 retina GACCACCTTC 1.8 0.0018 E16.5 retina GGCCTGCCCC (6) 1.8 0.0018 E18.5 retina AGCTGAGCCG (3) 9.1 0.0091 E18.5 retina CAAGGGGAGG (3) 3.6 0.0036 E18.5 retina GGCCTGCCCC (6) 3.6 0.0036 P0.5 retina GTACTGGCCA (3) 7.9 0.0079 P0.5 retina GACCACCTTC 2 0.002 P2.5 retina AGCTGAGCCG (3) 3.5 0.0035 P2.5 retina GGCCTGCCCC (6) 3.5 0.0035 P2.5 retina TCAGAGGGTC (2) 3.5 0.0035 P2.5 retina CAAGGGGAGG (3) 1.8 0.0018 P2.5 retina GACCACCTTC 1.8 0.0018 P2.5 retina GGGGGGAGGA (4) 1.8 0.0018 P4.5 retina CAAGGGGAGG (3) 4 0.004 P4.5 retina GTACTGGCCA (3) 4 0.004 P4.5 retina AGCTGAGCCG (3) 2 0.002 P4.5 retina GGCCTGCCCC (6) 2 0.002 P4.5 retina GGGGGGAGGA (4) 2 0.002 P4.5 retina TCAGAGGGTC (2) 2 0.002 P6.5 retina GTACTGGCCA (3) 8.3 0.0083 P6.5 retina AGCTGAGCCG (3) 3.3 0.0033 P6.5 retina GGCCTGCCCC (6) 3.3 0.0033 P6.5 retina CAAGGGGAGG (3) 1.7 0.0017 P6.5 retina GACCCCATTC (2) 1.7 0.0017 P6.5 retina TCAGAGGGTC (2) 1.7 0.0017 P10.5 crx- retina GACCACATTC 5.6 0.0056 P10.5 crx- retina GTACTGGCCA (3) 3.7 0.0037 P10.5 crx- retina AGCTGAGCCG (3) 1.9 0.0019 P10.5 crx+ retina AGCTGAGCCG (3) 5.8 0.0058 P10.5 crx+ retina CAAGGGGAGG (3) 1.9 0.0019 P10.5 crx+ retina GACCACATTC 1.9 0.0019 P10.5 crx+ retina GGCCTGCCCC (6) 1.9 0.0019 P10.5 crx+ retina GTACTGGCCA (3) 1.9 0.0019 Adult retinal GTACTGGCCA (3) 9.3 0.0093 Adult retinal GGTGGGGGAG (7) 3.7 0.0037 Adult retinal AGCTGAGCCG (3) 1.9 0.0019 Adult retinal GACCACCTTC 1.9 0.0019 ONL GTACTGGCCA (3) 3.8 0.0038 ONL CAAGGGGAGG (3) 1.9 0.0019