Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.34546
D17Ertd441e
DNA segment, Chr 17, ERATO Doi 441, expressed
17
17 A3.3 (17 11.0 cM)
52009
Human Homolog
C16orf34[chromosome 16 open reading frame 34]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 69 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TGCAACCACC (
3
)
4.9
0.0049
P8 Cb GC
GGCAGAGCTG
(
5
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TTACAAAACA (
5
)
2.3
0.0023
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GTTCTTCCTG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TAATTGCAAT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TGCAACCACC (
3
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
GTTCTTCCTG
(
3
)
10.5
0.0105
3T3 fibroblasts
TGCAACCACC (
3
)
7
0.007
3T3 fibroblasts
GGCAGAGCTG
(
5
)
3.5
0.0035
3T3 fibroblasts
TTTTGCTGTG
(
5
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
TAATTGCAAT
(
4
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TGCAACCACC (
3
)
9.1
0.0091
P1 cortex
GTTCTTCCTG
(
3
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TTTTGGTGTG (
5
)
5.4
0.0054
Hypothalamus
GTTCTTCCTG
(
3
)
1.8
0.0018
Hypothalamus
TGCAACCACC (
3
)
1.8
0.0018
Hypothalamus
TGGGTTGTTC
1.8
0.0018
Hypothalamus
TTATACAAAA (
5
)
1.8
0.0018
Hypothalamus
TTTTGCTGTG
(
5
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TGCAACCACC (
3
)
11.3
0.0113
E12.5 retina
GTTCTTCCTG
(
3
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TGCAACCACC (
3
)
3.6
0.0036
E14.5 retina
AACCCAGACT (
6
)
1.8
0.0018
E14.5 retina
TTACAAAACA (
5
)
1.8
0.0018
E14.5 retina
TTATACAAAA (
5
)
1.8
0.0018
E14.5 retina
TTTTGCTGTG
(
5
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TGCAACCACC (
3
)
7.2
0.0072
E16.5 retina
TAATTGCAAT
(
4
)
3.6
0.0036
E16.5 retina
TGGGTTGTTC
1.8
0.0018
E16.5 retina
TTATACAAAA (
5
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TGCAACCACC (
3
)
7.3
0.0073
E18.5 retina
TTATACAAAA (
5
)
3.6
0.0036
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GTTCTTCCTG
(
3
)
3.9
0.0039
P0.5 retina
AACCCAGACT (
6
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TGCAACCACC (
3
)
7
0.007
P2.5 retina
GGCAGAGCTG
(
5
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TGCAACCACC (
3
)
4
0.004
P4.5 retina
TTATACAAAA (
5
)
2
0.002
P4.5 retina
TTTTGGTGTG (
5
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TAATTGCAAT
(
4
)
1.7
0.0017
P6.5 retina
TTATACAAAA (
5
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
TAATTGCAAT
(
4
)
3.7
0.0037
P10.5 crx- retina
TGCAACCACC (
3
)
1.9
0.0019
P10.5 crx- retina
TTATACAAAA (
5
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GGCAGAGCTG
(
5
)
1.9
0.0019
P10.5 crx+ retina
TTTTGGTGTG (
5
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TAATTGCAAT
(
4
)
3.8
0.0038
ONL
AACCCAGACT (
6
)
1.9
0.0019
ONL
TGCAACCACC (
3
)
1.9
0.0019
