Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4606	Bcat1	branched chain aminotransferase 1, cytosolic	6	6 73.9 cM	12035
Gene Ontology	branched chain family amino acid biosynthesis | branched chain family amino acid catabolism | branched chain family amino acid metabolism | branched-chain-amino-acid transaminase activity | branched-chain-amino-acid transaminase activity | catalytic activity | cytosol | metabolism | transaminase activity | transferase activity
Human Homolog	BCAT1[branched chain aminotransferase 1, cytosolic]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 61 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAATGACAG (2) 13.1 0.0131 P8 Cb GC CAGGCAAAAT (8) 4.9 0.0049 P8 Cb GC ATTTGTTTTT (2) 3.3 0.0033 P8 Cb GC GGGAGCCCAA 1.6 0.0016 Cb medulloblastoma GAAGTGACAG (5) 9.2 0.0092 P8 GC+1d culture GAAATGACAG (2) 6.8 0.0068 P8 GC+1d culture ATTTGTTTTT (2) 1.1 0.0011 P8 GC+1d culture GGGAGCCCAA 1.1 0.0011 P8 GC+SHH+1d culture GAAATGACAG (2) 8.2 0.0082 P8 GC+SHH+1d culture CAGGCAAAAT (8) 2.3 0.0023 P8 GC+SHH+1d culture GAAGTGACAG (5) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGCCCAA 1.2 0.0012 3T3 fibroblasts GAAGTGACAG (5) 7 0.007 3T3 fibroblasts GAAATGACAG (2) 3.5 0.0035 E15 cortex GAAGTGACAG (5) 4.9 0.0049 P1 cortex GAAGTGACAG (5) 4.5 0.0045 Hypothalamus GAAGTGACAG (5) 5.4 0.0054 Hypothalamus GGGAGCCCAA 1.8 0.0018 E12.5 retina GAAGTGACAG (5) 20.7 0.0207 E12.5 retina GGGAGCCCAA 7.5 0.0075 E12.5 retina CAGGCAAAAT (8) 1.9 0.0019 E14.5 retina GAAGTGACAG (5) 31 0.031 E14.5 retina GGGAGCCCAA 10.9 0.0109 E14.5 retina CAGGCAAAAT (8) 5.5 0.0055 E14.5 retina TGTTACCAAA (4) 1.8 0.0018 E16.5 retina GAAGTGACAG (5) 23.5 0.0235 E16.5 retina CAGGCAAAAT (8) 1.8 0.0018 E16.5 retina GGGAGCCCAA 1.8 0.0018 E18.5 retina GAAGTGACAG (5) 27.3 0.0273 E18.5 retina CAGGCAAAAT (8) 5.5 0.0055 E18.5 retina AGCCCTTCCC (5) 1.8 0.0018 P0.5 retina GAAGTGACAG (5) 17.7 0.0177 P0.5 retina GGGAGCCCAA 3.9 0.0039 P0.5 retina ATTTGTTTTT (2) 2 0.002 P0.5 retina CAGGCAAAAT (8) 2 0.002 P2.5 retina GAAGTGACAG (5) 14.1 0.0141 P2.5 retina GGGAGCCCAA 5.3 0.0053 P2.5 retina CAGGCAAAAT (8) 3.5 0.0035 P2.5 retina AGCCCTTCCC (5) 1.8 0.0018 P2.5 retina ATTTGTTTTT (2) 1.8 0.0018 P4.5 retina GAAGTGACAG (5) 45.6 0.0456 P4.5 retina GGGAGCCCAA 7.9 0.0079 P4.5 retina CAGGCAAAAT (8) 4 0.004 P4.5 retina AGCCCTTCCC (5) 2 0.002 P6.5 retina GAAGTGACAG (5) 18.3 0.0183 P6.5 retina GGGAGCCCAA 5 0.005 P6.5 retina CAGGCAAAAT (8) 1.7 0.0017 P6.5 retina TGTTACCAAA (4) 1.7 0.0017 P10.5 crx- retina GAAGTGACAG (5) 29.7 0.0297 P10.5 crx- retina GGGAGCCCAA 3.7 0.0037 P10.5 crx- retina TGTTACCAAA (4) 1.9 0.0019 P10.5 crx+ retina GAAGTGACAG (5) 11.5 0.0115 P10.5 crx+ retina AGCCCTTCCC (5) 1.9 0.0019 P10.5 crx+ retina CAGGCAAAAT (8) 1.9 0.0019 Adult retinal GGGAGCCCAA 5.6 0.0056 Adult retinal CAGGCAAAAT (8) 1.9 0.0019 Adult retinal GAAGTGACAG (5) 1.9 0.0019 ONL CAGGCAAAAT (8) 9.6 0.0096 ONL GAAGTGACAG (5) 9.6 0.0096 ONL ATTTGTTTTT (2) 1.9 0.0019 ONL GGGAGCCCAA 1.9 0.0019