Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.10027	Prpf4b	PRP4 pre-mRNA processing factor 4 homolog B (yeast)	13		19134
Gene Ontology	ATP binding | chromosome | kinase activity | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | transferase activity
Human Homolog	PRPF4B[PRP4 pre-mRNA processing factor 4 homolog B (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 62 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAAGTGGGC (3) 3.3 0.0033 P8 Cb GC TTTCTGGATA (5) 3.3 0.0033 P8 Cb GC AGCCAAGGGT (2) 1.6 0.0016 Cb medulloblastoma GGAAGTGGGC (3) 6.9 0.0069 Cb medulloblastoma AGCAACATTA (6) 4.6 0.0046 Cb medulloblastoma AGCCAAGGGT (2) 2.3 0.0023 Cb medulloblastoma TCAGTGTTGA (2) 2.3 0.0023 P8 GC+1d culture GGAAGTGGGC (3) 8 0.008 P8 GC+1d culture AGCCAAGGGT (2) 3.4 0.0034 P8 GC+1d culture TTTCTGGATA (5) 2.3 0.0023 P8 GC+1d culture TCAGTGTTGA (2) 1.1 0.0011 P8 GC+SHH+1d culture GGAAGTGGGC (3) 7 0.007 3T3 fibroblasts GGAAGTGGGC (3) 7 0.007 E15 cortex GGAAGTGGGC (3) 14.8 0.0148 E15 cortex AGCCAAGGGT (2) 4.9 0.0049 P1 cortex AGCAACATTA (6) 4.5 0.0045 P1 cortex TCAGTGTTGA (2) 4.5 0.0045 Hypothalamus GGAAGTGGGC (3) 5.4 0.0054 Hypothalamus TCAGTGTTGA (2) 1.8 0.0018 Hypothalamus TGTTAAAATT 1.8 0.0018 E12.5 retina GGAAGTGGGC (3) 13.1 0.0131 E14.5 retina GGAAGTGGGC (3) 7.3 0.0073 E14.5 retina AGCCAAGGGT (2) 1.8 0.0018 E16.5 retina GGAAGTGGGC (3) 7.2 0.0072 E16.5 retina AGCCAAGGGT (2) 5.4 0.0054 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina TTGTCTTTCA 1.8 0.0018 E18.5 retina GGAAGTGGGC (3) 7.3 0.0073 P0.5 retina AGCCAAGGGT (2) 11.8 0.0118 P0.5 retina GGAAGTGGGC (3) 3.9 0.0039 P0.5 retina AGCAACATTA (6) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina TTTCTGGATA (5) 2 0.002 P2.5 retina GGAAGTGGGC (3) 7 0.007 P2.5 retina TCAGTGTTGA (2) 3.5 0.0035 P2.5 retina TTTCTGGATA (5) 3.5 0.0035 P2.5 retina AGCCAAGGGT (2) 1.8 0.0018 P2.5 retina TTGTCTTTCA 1.8 0.0018 P4.5 retina AGCCAAGGGT (2) 9.9 0.0099 P4.5 retina GGAAGTGGGC (3) 7.9 0.0079 P4.5 retina TCAGTGTTGA (2) 5.9 0.0059 P4.5 retina TAATTCCTTT (2) 2 0.002 P6.5 retina GGAAGTGGGC (3) 11.7 0.0117 P6.5 retina AGCCAAGGGT (2) 5 0.005 P6.5 retina AGCAACATTA (6) 1.7 0.0017 P10.5 crx- retina AGCCAAGGGT (2) 3.7 0.0037 P10.5 crx- retina GGAAGTGGGC (3) 1.9 0.0019 P10.5 crx- retina TAATTCCTTT (2) 1.9 0.0019 P10.5 crx- retina TGTTAAAATT 1.9 0.0019 P10.5 crx- retina TTTCTGGATA (5) 1.9 0.0019 P10.5 crx+ retina GGAAGTGGGC (3) 11.5 0.0115 P10.5 crx+ retina TCAGTGTTGA (2) 3.8 0.0038 P10.5 crx+ retina AGCCAAGGGT (2) 1.9 0.0019 Adult retinal TCAGTGTTGA (2) 5.6 0.0056 Adult retinal AGCCAAGGGT (2) 3.7 0.0037 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal GGAAGTGGGC (3) 3.7 0.0037 ONL AGCCAAGGGT (2) 3.8 0.0038 ONL TCAGTGTTGA (2) 3.8 0.0038 ONL TGTTAAAATT 3.8 0.0038 ONL TAATTCCTTT (2) 1.9 0.0019 ONL TTGTCTTTCA 1.9 0.0019