Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.102496	Ndfip1	Nedd4 family interacting protein 1	18	18 B3	65113
Gene Ontology	biological_process unknown | integral to membrane | protein binding
Human Homolog	NDFIP1[Nedd4 family interacting protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 17 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 63 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCACCACGTT (4) 4.9 0.0049 P8 Cb GC GCATTCCTCT (3) 4.9 0.0049 P8 Cb GC TCCCTGTAGT (4) 4.9 0.0049 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC GCCTTGGCGT (2) 1.6 0.0016 Cb medulloblastoma GCACCACGTT (4) 2.3 0.0023 Cb medulloblastoma GCATTCCTCT (3) 2.3 0.0023 Cb medulloblastoma GCCTTGGCGT (2) 2.3 0.0023 Cb medulloblastoma TCCCTGTAGT (4) 2.3 0.0023 P8 GC+1d culture GCACCACGTT (4) 4.6 0.0046 P8 GC+1d culture TCCCTGTAGT (4) 4.6 0.0046 P8 GC+1d culture GCATTCCTCT (3) 2.3 0.0023 P8 GC+SHH+1d culture TCCCTGTAGT (4) 3.5 0.0035 P8 GC+SHH+1d culture GCACCACGTT (4) 1.2 0.0012 3T3 fibroblasts TCCCTGTAGT (4) 7 0.007 E15 cortex CTGGAAGCTG (5) 4.9 0.0049 P1 cortex GCACCACGTT (4) 4.5 0.0045 P1 cortex TCCCTGTAGT (4) 4.5 0.0045 Hypothalamus TCCCTGTAGT (4) 7.2 0.0072 Hypothalamus CTGGAAGCTG (5) 5.4 0.0054 Hypothalamus GCATTCCTCT (3) 3.6 0.0036 Hypothalamus GCACCACGTT (4) 1.8 0.0018 Hypothalamus GCCTTGGCGT (2) 1.8 0.0018 E12.5 retina TCCCTGTAGT (4) 3.8 0.0038 E12.5 retina GGGGTTCACA (5) 1.9 0.0019 E14.5 retina GCACCACGTT (4) 3.6 0.0036 E14.5 retina TCCCTGTAGT (4) 1.8 0.0018 E16.5 retina TCCCTGTAGT (4) 5.4 0.0054 E16.5 retina GCACCACGTT (4) 3.6 0.0036 E16.5 retina GCATTCCTCT (3) 3.6 0.0036 E18.5 retina GCACCACGTT (4) 3.6 0.0036 E18.5 retina TATCTTTATT (4) 1.8 0.0018 E18.5 retina TCCCTGTAGT (4) 1.8 0.0018 P0.5 retina TCCCTGTAGT (4) 15.7 0.0157 P0.5 retina GCACCACGTT (4) 3.9 0.0039 P2.5 retina GCATTCCTCT (3) 5.3 0.0053 P2.5 retina GCACCACGTT (4) 3.5 0.0035 P2.5 retina TCCCTGTAGT (4) 3.5 0.0035 P2.5 retina CTGGAAGCTG (5) 1.8 0.0018 P2.5 retina GGGGTTCACA (5) 1.8 0.0018 P4.5 retina TCCCTGTAGT (4) 13.9 0.0139 P4.5 retina GGGGTTCACA (5) 4 0.004 P4.5 retina ATTCCGAATT (107) 2 0.002 P4.5 retina GCATTCCTCT (3) 2 0.002 P6.5 retina TCCCTGTAGT (4) 13.3 0.0133 P6.5 retina GCACCACGTT (4) 5 0.005 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina GCATTCCTCT (3) 3.3 0.0033 P10.5 crx- retina GCATTCCTCT (3) 14.9 0.0149 P10.5 crx- retina TCCCTGTAGT (4) 13 0.013 P10.5 crx- retina GCACCACGTT (4) 5.6 0.0056 P10.5 crx- retina TATCTTTATT (4) 3.7 0.0037 P10.5 crx- retina GCCTTGGCGT (2) 1.9 0.0019 P10.5 crx+ retina GCATTCCTCT (3) 15.4 0.0154 P10.5 crx+ retina GCACCACGTT (4) 7.7 0.0077 P10.5 crx+ retina TCCCTGTAGT (4) 5.8 0.0058 Adult retinal TCCCTGTAGT (4) 11.1 0.0111 Adult retinal GCATTCCTCT (3) 3.7 0.0037 Adult retinal GCCTTGGCGT (2) 1.9 0.0019 ONL TCCCTGTAGT (4) 7.7 0.0077 ONL ATTCCGAATT (107) 3.8 0.0038 ONL GCATTCCTCT (3) 3.8 0.0038 ONL GGGGTTCACA (5) 1.9 0.0019