Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.10504	Pdpk1	3-phosphoinositide dependent protein kinase-1	17		18607
Gene Ontology	3-phosphoinositide-dependent protein kinase activity | ATP binding | cytoplasm | cytoplasmic vesicle | hyperosmotic response | kinase activity | membrane | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | signal transduction | transferase activity
Human Homolog	PDPK1[3-phosphoinositide dependent protein kinase-1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGAGTGTAA 8.2 0.0082 P8 Cb GC CAGGAGCAGA (5) 1.6 0.0016 P8 Cb GC GGGAGGGAAA (8) 1.6 0.0016 P8 Cb GC TCAGAGGTGT (9) 1.6 0.0016 Cb medulloblastoma TAGAGTGTAA 25.4 0.0254 Cb medulloblastoma GGGGAAAAAA (28) 4.6 0.0046 Cb medulloblastoma TCAGAGGATG 2.3 0.0023 P8 GC+1d culture TAGAGTGTAA 3.4 0.0034 P8 GC+1d culture GATGGCACCA (4) 1.1 0.0011 P8 GC+1d culture GGGGAAAAAA (28) 1.1 0.0011 P8 GC+SHH+1d culture TAGAGTGTAA 4.7 0.0047 3T3 fibroblasts CAGGAGCAGA (5) 3.5 0.0035 3T3 fibroblasts TCAGAGGATG 3.5 0.0035 E15 cortex GATGGCACCA (4) 4.9 0.0049 E15 cortex GGGGAAAAAA (28) 4.9 0.0049 E15 cortex TAGAGTGTAA 4.9 0.0049 P1 cortex TCAGAGGATG 4.5 0.0045 Hypothalamus TCAGAGGTGT (9) 5.4 0.0054 Hypothalamus TAGAGTGTAA 3.6 0.0036 Hypothalamus GATGGCACCA (4) 1.8 0.0018 E12.5 retina CAGGAGCAGA (5) 1.9 0.0019 E12.5 retina GGGGAAAAAA (28) 1.9 0.0019 E12.5 retina TCAGAGGATG 1.9 0.0019 E14.5 retina TAGAGTGTAA 3.6 0.0036 E16.5 retina TAGAGTGTAA 7.2 0.0072 E16.5 retina TTTTTACATC (2) 5.4 0.0054 E16.5 retina TCAGAGGATG 3.6 0.0036 E16.5 retina GGGGAAAAAA (28) 1.8 0.0018 E18.5 retina TAGAGTGTAA 5.5 0.0055 E18.5 retina GGGGAAAAAA (28) 3.6 0.0036 E18.5 retina GTTTAATCAT 1.8 0.0018 P2.5 retina TAGAGTGTAA 7 0.007 P2.5 retina TTTTTACATC (2) 3.5 0.0035 P2.5 retina GGGAGGGAAA (8) 1.8 0.0018 P4.5 retina TAGAGTGTAA 15.9 0.0159 P4.5 retina TCAGAGGTGT (9) 4 0.004 P4.5 retina GTTTAATCAT 2 0.002 P4.5 retina TTTTTACATC (2) 2 0.002 P6.5 retina TAGAGTGTAA 5 0.005 P6.5 retina TTTTTACATC (2) 3.3 0.0033 P6.5 retina GGATTTCACC (3) 1.7 0.0017 P6.5 retina GGGGAAAAAA (28) 1.7 0.0017 P6.5 retina TCAGAGGATG 1.7 0.0017 P10.5 crx- retina TAGAGTGTAA 7.4 0.0074 P10.5 crx- retina TTTTTACATC (2) 7.4 0.0074 P10.5 crx- retina GGATTTCACC (3) 5.6 0.0056 P10.5 crx- retina TCAGAGGTGT (9) 3.7 0.0037 P10.5 crx+ retina GGATTTCACC (3) 3.8 0.0038 P10.5 crx+ retina CAGGAGCAGA (5) 1.9 0.0019 P10.5 crx+ retina GGGAGGGAAA (8) 1.9 0.0019 P10.5 crx+ retina TAGAGTGTAA 1.9 0.0019 Adult retinal TAGAGTGTAA 3.7 0.0037 Adult retinal GGATTTCACC (3) 1.9 0.0019 ONL TAGAGTGTAA 3.8 0.0038 ONL GTTTAATCAT 1.9 0.0019