Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.105218	Irf1	interferon regulatory factor 1	11	11 29.0 cM	16362
Gene Ontology	DNA binding | immune response | nucleus | positive regulation of interleukin-12 biosynthesis | positive regulation of interleukin-12 biosynthesis | positive regulation of transcription, DNA-dependent | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	IRF1[interferon regulatory factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 34 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTCCACCT (3) 1.6 0.0016 P8 Cb GC GGGACAACCA (7) 1.6 0.0016 P8 Cb GC TGGTGGACCT (2) 1.6 0.0016 Cb medulloblastoma ACCCCAGCAG (3) 2.3 0.0023 Cb medulloblastoma CCTTCCACCT (3) 2.3 0.0023 Cb medulloblastoma GGTTCACTCT (12) 2.3 0.0023 P8 GC+1d culture GGGACAACCA (7) 4.6 0.0046 P8 GC+1d culture TGGTGGACCT (2) 3.4 0.0034 P8 GC+1d culture CCTTCCACCT (3) 1.1 0.0011 P8 GC+SHH+1d culture TGGTGGACCT (2) 9.4 0.0094 P8 GC+SHH+1d culture CCTTCCACCT (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGACAACCA (7) 1.2 0.0012 3T3 fibroblasts TGGTGGACCT (2) 10.5 0.0105 Hypothalamus CCTTCCACCT (3) 5.4 0.0054 Hypothalamus TGGTGGACCT (2) 1.8 0.0018 E14.5 retina ATGCTGGAGA (5) 3.6 0.0036 E14.5 retina GGTTCACTCT (12) 1.8 0.0018 E14.5 retina TGGTGGACCT (2) 1.8 0.0018 E16.5 retina TGACTGCTGG (2) 3.6 0.0036 P0.5 retina CCTTCCACCT (3) 2 0.002 P0.5 retina TGGTGGACCT (2) 2 0.002 P2.5 retina CCTTCCACCT (3) 1.8 0.0018 P2.5 retina GGGACAACCA (7) 1.8 0.0018 P4.5 retina CCTTCCACCT (3) 4 0.004 P4.5 retina ACCCCAGCAG (3) 2 0.002 P6.5 retina ACCCCAGCAG (3) 1.7 0.0017 P6.5 retina GGTTCACTCT (12) 1.7 0.0017 P10.5 crx- retina CCTTCCACCT (3) 5.6 0.0056 P10.5 crx- retina ATGCTGGAGA (5) 1.9 0.0019 P10.5 crx- retina TGGTGGACCT (2) 1.9 0.0019 P10.5 crx+ retina GGGACAACCA (7) 1.9 0.0019 Adult retinal GGGACAACCA (7) 1.9 0.0019 Adult retinal TGACTGCTGG (2) 1.9 0.0019 ONL ATGCTGGAGA (5) 1.9 0.0019