Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.105343
5830411G16Rik
RIKEN cDNA 5830411G16 gene
6
78937
Mm.105343
4933427C19Rik
RIKEN cDNA 4933427C19 gene
6
71216
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 56 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAGAAGTCTG (
10
)
24.5
0.0245
P8 Cb GC
AAATATCGTT (
3
)
4.9
0.0049
Cb medulloblastoma
GAGAAGTCTG (
10
)
9.2
0.0092
Cb medulloblastoma
AAATATCGTT (
3
)
6.9
0.0069
P8 GC+1d culture
AAATATCGTT (
3
)
12.6
0.0126
P8 GC+1d culture
GAGAAGTCTG (
10
)
9.1
0.0091
P8 GC+1d culture
TCTAGTCATA
(
3
)
4.6
0.0046
P8 GC+1d culture
TTTCAGTCCA (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
GAGAAGTCTG (
10
)
23.4
0.0234
P8 GC+SHH+1d culture
AAATATCGTT (
3
)
10.5
0.0105
P8 GC+SHH+1d culture
TCTAGTCATA
(
3
)
4.7
0.0047
P8 GC+SHH+1d culture
GCTGAGAAAA (
15
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTCAGTCCA (
3
)
1.2
0.0012
3T3 fibroblasts
GAGAAGTCTG (
10
)
10.5
0.0105
3T3 fibroblasts
AAATATCGTT (
3
)
3.5
0.0035
P1 cortex
AAATATCGTT (
3
)
22.7
0.0227
Hypothalamus
AAATATCGTT (
3
)
7.2
0.0072
Hypothalamus
GAGAAGTCTG (
10
)
5.4
0.0054
Hypothalamus
GCTGAGAAAA (
15
)
1.8
0.0018
Hypothalamus
TCTAGTCATA
(
3
)
1.8
0.0018
E12.5 retina
AAATATCGTT (
3
)
15
0.015
E12.5 retina
GAGAAGTCTG (
10
)
7.5
0.0075
E14.5 retina
GAGAAGTCTG (
10
)
9.1
0.0091
E14.5 retina
AAATATCGTT (
3
)
7.3
0.0073
E14.5 retina
TCTAGTCATA
(
3
)
1.8
0.0018
E16.5 retina
GAGAAGTCTG (
10
)
30.8
0.0308
E16.5 retina
AAATATCGTT (
3
)
5.4
0.0054
E18.5 retina
GAGAAGTCTG (
10
)
12.7
0.0127
E18.5 retina
AAATATCGTT (
3
)
3.6
0.0036
E18.5 retina
TCTAGTCATA
(
3
)
1.8
0.0018
P0.5 retina
GAGAAGTCTG (
10
)
13.7
0.0137
P0.5 retina
AAATATCGTT (
3
)
7.9
0.0079
P2.5 retina
GAGAAGTCTG (
10
)
14.1
0.0141
P2.5 retina
AAATATCGTT (
3
)
10.6
0.0106
P2.5 retina
TCTAGTCATA
(
3
)
5.3
0.0053
P2.5 retina
TTTCAGTCCA (
3
)
1.8
0.0018
P4.5 retina
TCTAGTCATA
(
3
)
7.9
0.0079
P4.5 retina
AAATATCGTT (
3
)
5.9
0.0059
P4.5 retina
GAGAAGTCTG (
10
)
4
0.004
P6.5 retina
AAATATCGTT (
3
)
13.3
0.0133
P6.5 retina
GAGAAGTCTG (
10
)
5
0.005
P6.5 retina
TTTCAGTCCA (
3
)
5
0.005
P10.5 crx- retina
AAATATCGTT (
3
)
18.6
0.0186
P10.5 crx- retina
GAGAAGTCTG (
10
)
5.6
0.0056
P10.5 crx- retina
TCTAGTCATA
(
3
)
1.9
0.0019
P10.5 crx+ retina
AAATATCGTT (
3
)
11.5
0.0115
P10.5 crx+ retina
GCTGAGAAAA (
15
)
3.8
0.0038
P10.5 crx+ retina
TTTCAGTCCA (
3
)
3.8
0.0038
P10.5 crx+ retina
GAGAAGTCTG (
10
)
1.9
0.0019
P10.5 crx+ retina
TCTAGTCATA
(
3
)
1.9
0.0019
Adult retinal
AAATATCGTT (
3
)
7.4
0.0074
Adult retinal
GAGAAGTCTG (
10
)
1.9
0.0019
Adult retinal
GCTGAGAAAA (
15
)
1.9
0.0019
Adult retinal
TCTAGTCATA
(
3
)
1.9
0.0019
ONL
AAATATCGTT (
3
)
7.7
0.0077
ONL
TTTCAGTCCA (
3
)
1.9
0.0019
