Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1104	Ube1x	ubiquitin-activating enzyme E1, Chr X	X	X 5.7 cM	22201
Gene Ontology	ATP binding | catalytic activity | ligase activity | protein modification | ubiquitin activating enzyme activity | ubiquitin cycle | ubiquitin-dependent protein catabolism
Human Homolog	UBE1[ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 150 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGATCCTGA (9) 97.9 0.0979 P8 Cb GC TAGCCAAGCC 21.2 0.0212 P8 Cb GC TGAATTTTTG (4) 13.1 0.0131 P8 Cb GC AGGCATTGAA (2) 4.9 0.0049 P8 Cb GC TTGGCCAGGC (2) 4.9 0.0049 P8 Cb GC ATCCAGCACA (3) 3.3 0.0033 P8 Cb GC GCCCGGAAAT 3.3 0.0033 P8 Cb GC CAGAAGAAGA (7) 1.6 0.0016 P8 Cb GC GACACCATTG (3) 1.6 0.0016 P8 Cb GC GACCACTGCC (3) 1.6 0.0016 P8 Cb GC GAGGTCTGAG (4) 1.6 0.0016 P8 Cb GC TTCTTTTTTA (7) 1.6 0.0016 Cb medulloblastoma TGGATCCTGA (9) 117.9 0.1179 Cb medulloblastoma TAGCCAAGCC 16.2 0.0162 Cb medulloblastoma AGGCATTGAA (2) 4.6 0.0046 Cb medulloblastoma GGGCCCCGGG (6) 4.6 0.0046 Cb medulloblastoma TGAATTTTTG (4) 4.6 0.0046 Cb medulloblastoma GACACCATTG (3) 2.3 0.0023 Cb medulloblastoma GCCCAGAACG (2) 2.3 0.0023 Cb medulloblastoma GTTCAGCAGG (5) 2.3 0.0023 P8 GC+1d culture TAGCCAAGCC 51.4 0.0514 P8 GC+1d culture TGGATCCTGA (9) 13.7 0.0137 P8 GC+1d culture TGAATTTTTG (4) 9.1 0.0091 P8 GC+1d culture AGGCATTGAA (2) 4.6 0.0046 P8 GC+1d culture ATCCAGCACA (3) 3.4 0.0034 P8 GC+1d culture TGCGGGCACT (2) 3.4 0.0034 P8 GC+1d culture GACCACTGCC (3) 1.1 0.0011 P8 GC+1d culture GAGGTCTGAG (4) 1.1 0.0011 P8 GC+1d culture GCCCGGAAAT 1.1 0.0011 P8 GC+SHH+1d culture TAGCCAAGCC 52.7 0.0527 P8 GC+SHH+1d culture ATCCAGCACA (3) 7 0.007 P8 GC+SHH+1d culture TGGATCCTGA (9) 7 0.007 P8 GC+SHH+1d culture TGAATTTTTG (4) 5.9 0.0059 P8 GC+SHH+1d culture AGGCATTGAA (2) 2.3 0.0023 P8 GC+SHH+1d culture GGGCCCCGGG (6) 2.3 0.0023 P8 GC+SHH+1d culture CAGAAGAAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture GCCCGGAAAT 1.2 0.0012 P8 GC+SHH+1d culture GTGATCTCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTTCAGCAGG (5) 1.2 0.0012 P8 GC+SHH+1d culture TGCGGGCACT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTCTTTTTTA (7) 1.2 0.0012 P8 GC+SHH+1d culture TTGGCCAGGC (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTTTCATTG (3) 1.2 0.0012 3T3 fibroblasts TAGCCAAGCC 24.5 0.0245 3T3 fibroblasts TGAATTTTTG (4) 7 0.007 3T3 fibroblasts GAGGTCTGAG (4) 3.5 0.0035 3T3 fibroblasts GGGCCCCGGG (6) 3.5 0.0035 3T3 fibroblasts GTGGGTGGGT (5) 3.5 0.0035 E15 cortex TGGATCCTGA (9) 168.2 0.1682 E15 cortex TAGCCAAGCC 29.7 0.0297 E15 cortex GGCGGGATGA (3) 9.9 0.0099 P1 cortex ATCCAGCACA (3) 13.6 0.0136 P1 cortex TGGATCCTGA (9) 13.6 0.0136 P1 cortex GCCCGGAAAT 4.5 0.0045 P1 cortex TAGCCAAGCC 4.5 0.0045 Hypothalamus TGGATCCTGA (9) 50.7 0.0507 Hypothalamus TAGCCAAGCC 19.9 0.0199 Hypothalamus AGGCATTGAA (2) 5.4 0.0054 Hypothalamus GACAACTGCC (3) 3.6 0.0036 Hypothalamus ATCCAGCACA (3) 1.8 0.0018 Hypothalamus GCCCAGAACG (2) 1.8 0.0018 Hypothalamus GCCCGGAAAT 1.8 0.0018 Hypothalamus GCGGCCCAGC (3) 1.8 0.0018 Hypothalamus GGCGGGATGA (3) 1.8 0.0018 Hypothalamus GGGCCCCGGG (6) 1.8 0.0018 Hypothalamus GTTCAGCAGG (5) 1.8 0.0018 Hypothalamus TGCGGGCACT (2) 1.8 0.0018 E12.5 retina TAGCCAAGCC 33.8 0.0338 E12.5 retina AGGCATTGAA (2) 15 0.015 E12.5 retina TGGATCCTGA (9) 7.5 0.0075 E12.5 retina ATCCAGCACA (3) 3.8 0.0038 E12.5 retina GCCCGGAAAT 1.9 0.0019 E12.5 retina GCGGCCCAGC (3) 1.9 0.0019 E14.5 retina TGGATCCTGA (9) 40.1 0.0401 E14.5 retina TAGCCAAGCC 23.7 0.0237 E14.5 retina TTTTTCATTG (3) 14.6 0.0146 E14.5 retina AGGCATTGAA (2) 12.8 0.0128 E14.5 retina ATCCAGCACA (3) 7.3 0.0073 E14.5 retina TTGGCCAGGC (2) 7.3 0.0073 E14.5 retina GCGGCCCAGC (3) 1.8 0.0018 E14.5 retina GTGATCTCCA (2) 1.8 0.0018 E16.5 retina TAGCCAAGCC 48.9 0.0489 E16.5 retina TGGATCCTGA (9) 23.5 0.0235 E16.5 retina AGGCATTGAA (2) 12.7 0.0127 E16.5 retina TTGGCCAGGC (2) 10.9 0.0109 E16.5 retina GCGGCCCAGC (3) 5.4 0.0054 E16.5 retina ATCCAGCACA (3) 3.6 0.0036 E16.5 retina TGTGCCAAGG 3.6 0.0036 E16.5 retina GACACCATTG (3) 1.8 0.0018 E16.5 retina GGCGGGATGA (3) 1.8 0.0018 E16.5 retina TTTTTCATTG (3) 1.8 0.0018 E18.5 retina TAGCCAAGCC 41.8 0.0418 E18.5 retina AGGCATTGAA (2) 16.4 0.0164 E18.5 retina ATCCAGCACA (3) 1.8 0.0018 E18.5 retina GCCCAGAACG (2) 1.8 0.0018 E18.5 retina TGAATTTTTG (4) 1.8 0.0018 E18.5 retina TTGGCCAGGC (2) 1.8 0.0018 P0.5 retina TAGCCAAGCC 33.4 0.0334 P0.5 retina AGGCATTGAA (2) 5.9 0.0059 P0.5 retina TGGATCCTGA (9) 5.9 0.0059 P0.5 retina GGCGGGATGA (3) 3.9 0.0039 P0.5 retina ATCCAGCACA (3) 2 0.002 P0.5 retina GAGGTCTGAG (4) 2 0.002 P0.5 retina GTGGGTGGGT (5) 2 0.002 P0.5 retina TGTGCCAAGG 2 0.002 P2.5 retina TAGCCAAGCC 33.4 0.0334 P2.5 retina AGGCATTGAA (2) 5.3 0.0053 P2.5 retina TGGATCCTGA (9) 5.3 0.0053 P2.5 retina ATCCAGCACA (3) 1.8 0.0018 P2.5 retina GACAACTGCC (3) 1.8 0.0018 P2.5 retina GGGCCCCGGG (6) 1.8 0.0018 P4.5 retina TAGCCAAGCC 35.7 0.0357 P4.5 retina AGGCATTGAA (2) 7.9 0.0079 P4.5 retina ATCCAGCACA (3) 4 0.004 P4.5 retina GACCACTGCC (3) 4 0.004 P4.5 retina TGGATCCTGA (9) 2 0.002 P6.5 retina TAGCCAAGCC 31.7 0.0317 P6.5 retina GGGCCCCGGG (6) 6.7 0.0067 P6.5 retina TGGATCCTGA (9) 6.7 0.0067 P6.5 retina TGAATTTTTG (4) 1.7 0.0017 P6.5 retina TGTGCCAAGG 1.7 0.0017 P10.5 crx- retina TGGATCCTGA (9) 100.3 0.1003 P10.5 crx- retina TAGCCAAGCC 18.6 0.0186 P10.5 crx- retina AGGCATTGAA (2) 9.3 0.0093 P10.5 crx- retina TTGGCCAGGC (2) 3.7 0.0037 P10.5 crx- retina ATCCAGCACA (3) 1.9 0.0019 P10.5 crx- retina GAGGTCTGAG (4) 1.9 0.0019 P10.5 crx- retina GCCCAGAACG (2) 1.9 0.0019 P10.5 crx- retina GCGGCCCAGC (3) 1.9 0.0019 P10.5 crx- retina GTTCAGCAGG (5) 1.9 0.0019 P10.5 crx- retina TGTGCCAAGG 1.9 0.0019 P10.5 crx+ retina TGGATCCTGA (9) 30.8 0.0308 P10.5 crx+ retina TAGCCAAGCC 26.9 0.0269 P10.5 crx+ retina CAGAAGAAGA (7) 1.9 0.0019 P10.5 crx+ retina GAGGTCTGAG (4) 1.9 0.0019 P10.5 crx+ retina GGGCCCCGGG (6) 1.9 0.0019 P10.5 crx+ retina GTGATCTCCA (2) 1.9 0.0019 P10.5 crx+ retina GTGGGTGGGT (5) 1.9 0.0019 P10.5 crx+ retina TTCTTTTTTA (7) 1.9 0.0019 P10.5 crx+ retina TTGGCCAGGC (2) 1.9 0.0019 Adult retinal TAGCCAAGCC 18.5 0.0185 Adult retinal TGGATCCTGA (9) 7.4 0.0074 Adult retinal GGGCCCCGGG (6) 3.7 0.0037 Adult retinal GACCACTGCC (3) 1.9 0.0019 Adult retinal GAGGTCTGAG (4) 1.9 0.0019 Adult retinal TTCTTTTTTA (7) 1.9 0.0019 Adult retinal TTTTTCATTG (3) 1.9 0.0019 ONL TAGCCAAGCC 5.7 0.0057 ONL TTTTTCATTG (3) 3.8 0.0038 ONL TGGATCCTGA (9) 1.9 0.0019