Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.119	Nr4a1	nuclear receptor subfamily 4, group A, member 1	15		15370
Gene Ontology	DNA binding | inhibition of caspase activation | ligand-dependent nuclear receptor activity | nucleus | receptor activity | regulation of transcription, DNA-dependent | steroid hormone receptor activity | transcription factor activity
Human Homolog	NR4A1[nuclear receptor subfamily 4, group A, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 64 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC GTGAAGGAAG (8) 4.9 0.0049 P8 Cb GC TGTACATAAC 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma GACGGGTAAC (3) 2.3 0.0023 Cb medulloblastoma GTGAAGGAAG (8) 2.3 0.0023 Cb medulloblastoma TAGTTGAAAA 2.3 0.0023 Cb medulloblastoma TGTACATAAC 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GTGAAGGAAG (8) 3.4 0.0034 P8 GC+1d culture GGGCCTGGGA (3) 2.3 0.0023 P8 GC+1d culture TAGTTGAAAA 1.1 0.0011 P8 GC+1d culture TGTACATAAC 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture GTGAAGGAAG (8) 2.3 0.0023 P8 GC+SHH+1d culture TGTACATAAC 2.3 0.0023 P8 GC+SHH+1d culture GACGGGTAAC (3) 1.2 0.0012 P8 GC+SHH+1d culture GTGACTGATG (5) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts GTGACTGATG (5) 3.5 0.0035 3T3 fibroblasts TAGTTGAAAA 3.5 0.0035 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GACGGGTAAC (3) 4.5 0.0045 P1 cortex GTGACTGATG (5) 4.5 0.0045 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus GGGCCTGGGA (3) 5.4 0.0054 Hypothalamus GACGGGTAAC (3) 3.6 0.0036 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina GGGCCTGGGA (3) 5.6 0.0056 E12.5 retina GTGAAGGAAG (8) 1.9 0.0019 E12.5 retina GTGACTGATG (5) 1.9 0.0019 E12.5 retina TAGTTGAAAA 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina GAAAATGAAA (11) 10.9 0.0109 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina GGGCCTGGGA (3) 5.4 0.0054 E16.5 retina GACGGGTAAC (3) 1.8 0.0018 E16.5 retina GTGACTGATG (5) 1.8 0.0018 E16.5 retina TAGTTGAAAA 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina GGGCCTGGGA (3) 5.5 0.0055 E18.5 retina TAGTTGAAAA 3.6 0.0036 E18.5 retina GACGGGTAAC (3) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GACGGGTAAC (3) 3.9 0.0039 P0.5 retina GGGCCTGGGA (3) 3.9 0.0039 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina GAAAATGAAA (11) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina GTGAAGGAAG (8) 3.3 0.0033 P6.5 retina TAGTTGAAAA 3.3 0.0033 P6.5 retina GAAAATGAAA (11) 1.7 0.0017 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina GACGGGTAAC (3) 3.7 0.0037 P10.5 crx- retina GGGCCTGGGA (3) 1.9 0.0019 P10.5 crx- retina GTGAAGGAAG (8) 1.9 0.0019 P10.5 crx- retina TAGTTGAAAA 1.9 0.0019 P10.5 crx- retina TGTACATAAC 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal GACGGGTAAC (3) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287