Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.121920	D9Bwg1411e	DNA segment, Chr 9, Brigham & Women's Genetics 1411 expressed	9	9 24.0 cM	52810
Mm.121920	Sorl1	sortilin-related receptor, LDLR class A repeats-containing	9		20660
Gene Ontology	cholesterol metabolism | copper ion binding | development | electron transport | electron transporter activity | endocytosis | extracellular space | integral to membrane | lipid transport | lipid transporter activity | membrane | receptor activity
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TTTGCTACAA (3) 26.1 0.0261 P8 Cb GC AAGCACTGTG (10) 3.3 0.0033 P8 Cb GC GTGATAGCGT (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TTTGCTACAA (3) 20.8 0.0208 Cb medulloblastoma GTGATAGCGT (2) 6.9 0.0069 Cb medulloblastoma AAGCACTGTG (10) 2.3 0.0023 Cb medulloblastoma GATGCCGGAG (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TTTGCTACAA (3) 44.5 0.0445 P8 GC+1d culture AAGCACTGTG (10) 3.4 0.0034 P8 GC+1d culture TCTCTGTACA (3) 3.4 0.0034 P8 GC+1d culture GTGATAGCGT (2) 1.1 0.0011 P8 GC+1d culture TGTGAAGGGC (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TTTGCTACAA (3) 44.5 0.0445 P8 GC+SHH+1d culture AAGCACTGTG (10) 2.3 0.0023 P8 GC+SHH+1d culture TCTCTGTACA (3) 2.3 0.0023 P8 GC+SHH+1d culture CCCAGCAAGC (5) 1.2 0.0012 P8 GC+SHH+1d culture GATGCCGGAG (2) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AAGCACTGTG (10) 10.5 0.0105 3T3 fibroblasts TTTGCTACAA (3) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TTTGCTACAA (3) 9.9 0.0099 E15 cortex AAGCACTGTG (10) 4.9 0.0049 E15 cortex GTGATAGCGT (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TTTGCTACAA (3) 18.2 0.0182 P1 cortex TGTGAAGGGC (3) 13.6 0.0136 P1 cortex AAGCACTGTG (10) 4.5 0.0045 P1 cortex GATGCCGGAG (2) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TTTGCTACAA (3) 21.7 0.0217 Hypothalamus CCCAGCAAGC (5) 1.8 0.0018 Hypothalamus TGTGAAGGGC (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TTTGCTACAA (3) 67.6 0.0676 E12.5 retina AAGCACTGTG (10) 3.8 0.0038 E12.5 retina TGTGAAGGGC (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TTTGCTACAA (3) 52.8 0.0528 E16.5 retina TTTGCTACAA (3) 58 0.058 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TGGGTTTAGT (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TTTGCTACAA (3) 45.5 0.0455 E18.5 retina AAGCACTGTG (10) 3.6 0.0036 E18.5 retina CCCAGCAAGC (5) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TTTGCTACAA (3) 21.6 0.0216 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TTTGCTACAA (3) 33.4 0.0334 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TTTGCTACAA (3) 39.6 0.0396 P4.5 retina AAGCACTGTG (10) 2 0.002 P4.5 retina TGGGTTTAGT (2) 2 0.002 P4.5 retina TGTGAAGGGC (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TTTGCTACAA (3) 33.3 0.0333 P6.5 retina AAGCACTGTG (10) 1.7 0.0017 P6.5 retina TCTCTGTACA (3) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AAGCACTGTG (10) 14.9 0.0149 P10.5 crx- retina TTTGCTACAA (3) 9.3 0.0093 P10.5 crx- retina GATGCCGGAG (2) 1.9 0.0019 P10.5 crx- retina TCTCTGTACA (3) 1.9 0.0019 P10.5 crx- retina TGGGTTTAGT (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TTTGCTACAA (3) 23.1 0.0231 P10.5 crx+ retina AAGCACTGTG (10) 3.8 0.0038 P10.5 crx+ retina GTGATAGCGT (2) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TTTGCTACAA (3) 9.3 0.0093 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TTTGCTACAA (3) 13.4 0.0134 ONL AAGCACTGTG (10) 1.9 0.0019 ONL TGTGAAGGGC (3) 1.9 0.0019