Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1243	Rxrb	retinoid X receptor beta	17	17 C (17 18.49 cM)	20182
Gene Ontology	DNA binding | nucleus | receptor activity | regulation of transcription, DNA-dependent | steroid binding
Human Homolog	RXRB[retinoid X receptor, beta]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGCAAAAC (40) 11.4 0.0114 P8 Cb GC GGAGCAGGGC 1.6 0.0016 P8 Cb GC GTTTTTGCCC 1.6 0.0016 P8 Cb GC TCTGTGTGTC (2) 1.6 0.0016 Cb medulloblastoma CAGGCAAAAC (40) 4.6 0.0046 Cb medulloblastoma GTTTTTGCCC 4.6 0.0046 Cb medulloblastoma GGAGCAGGGC 2.3 0.0023 P8 GC+1d culture CAGGCAAAAC (40) 5.7 0.0057 P8 GC+1d culture GTTTTTGCCC 4.6 0.0046 P8 GC+1d culture CCGCGGGGCA (2) 1.1 0.0011 P8 GC+1d culture GGAGCAGGGC 1.1 0.0011 P8 GC+1d culture TCTGTGTGTC (2) 1.1 0.0011 P8 GC+SHH+1d culture CAGGCAAAAC (40) 11.7 0.0117 P8 GC+SHH+1d culture GTTTTTGCCC 5.9 0.0059 P8 GC+SHH+1d culture TCTGTGTGTC (2) 3.5 0.0035 P8 GC+SHH+1d culture CAGCCCAGCA (3) 1.2 0.0012 3T3 fibroblasts CAGGCAAAAC (40) 10.5 0.0105 E15 cortex GTTTTTGCCC 9.9 0.0099 E15 cortex CAGGCAAAAC (40) 4.9 0.0049 P1 cortex CAGGCAAAAC (40) 9.1 0.0091 P1 cortex GTTTTTGCCC 4.5 0.0045 Hypothalamus CAGGCAAAAC (40) 5.4 0.0054 Hypothalamus GTTTTTGCCC 5.4 0.0054 Hypothalamus GGAGCAGGGC 3.6 0.0036 Hypothalamus TCTGTGTGTC (2) 1.8 0.0018 E12.5 retina CAGGCAAAAC (40) 20.7 0.0207 E12.5 retina GTTTTTGCCC 11.3 0.0113 E12.5 retina TCTGTGTGTC (2) 5.6 0.0056 E14.5 retina CAGGCAAAAC (40) 12.8 0.0128 E16.5 retina CAGGCAAAAC (40) 9.1 0.0091 E16.5 retina CAGCCCAGCA (3) 1.8 0.0018 E16.5 retina GTTTTTGCCC 1.8 0.0018 E18.5 retina CAGGCAAAAC (40) 12.7 0.0127 E18.5 retina GTTTTTGCCC 3.6 0.0036 P0.5 retina CAGGCAAAAC (40) 13.7 0.0137 P0.5 retina GGAGCAGGGC 2 0.002 P0.5 retina GTTTTTGCCC 2 0.002 P2.5 retina CAGGCAAAAC (40) 24.6 0.0246 P2.5 retina GTTTTTGCCC 5.3 0.0053 P2.5 retina TCTGTGTGTC (2) 1.8 0.0018 P4.5 retina CAGGCAAAAC (40) 13.9 0.0139 P4.5 retina GTTTTTGCCC 11.9 0.0119 P4.5 retina GGAGCAGGGC 2 0.002 P4.5 retina TCTGTGTGTC (2) 2 0.002 P6.5 retina CAGGCAAAAC (40) 16.7 0.0167 P6.5 retina CCGCGGGGCA (2) 1.7 0.0017 P6.5 retina GTTTTTGCCC 1.7 0.0017 P10.5 crx- retina CAGGCAAAAC (40) 11.1 0.0111 P10.5 crx- retina GTTTTTGCCC 11.1 0.0111 P10.5 crx- retina TCTGTGTGTC (2) 1.9 0.0019 P10.5 crx+ retina CAGGCAAAAC (40) 13.5 0.0135 P10.5 crx+ retina GTTTTTGCCC 3.8 0.0038 P10.5 crx+ retina TCTGTGTGTC (2) 3.8 0.0038 Adult retinal CAGGCAAAAC (40) 11.1 0.0111 Adult retinal GTTTTTGCCC 3.7 0.0037 Adult retinal CCGCGGGGCA (2) 1.9 0.0019 Adult retinal TCTGTGTGTC (2) 1.9 0.0019 ONL CAGGCAAAAC (40) 34.5 0.0345 ONL CAGCCCAGCA (3) 1.9 0.0019 ONL GTTTTTGCCC 1.9 0.0019