Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.125167
2600003E23Rik
RIKEN cDNA 2600003E23 gene
5
70292
Human Homolog
AFAP[actin filament associated protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 84 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGGTTGTCT (
7
)
577.5
0.5775
P8 Cb GC
GCACAGGAGA
(
2
)
27.7
0.0277
P8 Cb GC
AGGCTGGGCC
6.5
0.0065
P8 Cb GC
GCTGCCTCCT
(
4
)
1.6
0.0016
Cb medulloblastoma
TGGGTTGTCT (
7
)
235.9
0.2359
P8 GC+1d culture
TGGGTTGTCT (
7
)
537.7
0.5377
P8 GC+1d culture
GCACAGGAGA
(
2
)
25.1
0.0251
P8 GC+1d culture
GCCCTGGGGC (
7
)
10.3
0.0103
P8 GC+1d culture
AGGCTGGGCC
3.4
0.0034
P8 GC+1d culture
ACACAGAAGT (
4
)
1.1
0.0011
P8 GC+1d culture
GTCCTGGCGT
1.1
0.0011
P8 GC+SHH+1d culture
TGGGTTGTCT (
7
)
530.4
0.5304
P8 GC+SHH+1d culture
GCACAGGAGA
(
2
)
14.1
0.0141
P8 GC+SHH+1d culture
AGGCTGGGCC
5.9
0.0059
P8 GC+SHH+1d culture
GCTGCCTCCT
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
GCCCTGGGGC (
7
)
1.2
0.0012
P8 GC+SHH+1d culture
GTCCTGGCGT
1.2
0.0012
3T3 fibroblasts
TGGGTTGTCT (
7
)
147.2
0.1472
3T3 fibroblasts
GCCCTGGGGC (
7
)
31.5
0.0315
3T3 fibroblasts
AGGCTGGGCC
14
0.014
3T3 fibroblasts
GCACAGGAGA
(
2
)
7
0.007
3T3 fibroblasts
GCTGCCTCCT
(
4
)
3.5
0.0035
3T3 fibroblasts
GTCCTGGCGT
3.5
0.0035
E15 cortex
TGGGTTGTCT (
7
)
272.1
0.2721
E15 cortex
GCACAGGAGA
(
2
)
14.8
0.0148
E15 cortex
GCCCTGGGGC (
7
)
4.9
0.0049
P1 cortex
TGGGTTGTCT (
7
)
290.9
0.2909
P1 cortex
GCACAGGAGA
(
2
)
4.5
0.0045
P1 cortex
GCCCTGGGGC (
7
)
4.5
0.0045
P1 cortex
GCTGCCTCCT
(
4
)
4.5
0.0045
Hypothalamus
TGGGTTGTCT (
7
)
382.2
0.3822
Hypothalamus
GCCCTGGGGC (
7
)
7.2
0.0072
Hypothalamus
GCACAGGAGA
(
2
)
3.6
0.0036
E12.5 retina
TGGGTTGTCT (
7
)
963.1
0.9631
E12.5 retina
GCACAGGAGA
(
2
)
9.4
0.0094
E12.5 retina
ACACAGAAGT (
4
)
3.8
0.0038
E12.5 retina
GCCCTGGGGC (
7
)
3.8
0.0038
E12.5 retina
AGGCTGGGCC
1.9
0.0019
E14.5 retina
TGGGTTGTCT (
7
)
1189.8
1.1898
E14.5 retina
GCACAGGAGA
(
2
)
5.5
0.0055
E14.5 retina
AGGCTGGGCC
1.8
0.0018
E14.5 retina
GGGGGGCTGG (
8
)
1.8
0.0018
E16.5 retina
TGGGTTGTCT (
7
)
1233.4
1.2334
E16.5 retina
GCTGCCTCCT
(
4
)
3.6
0.0036
E16.5 retina
GCCCTGGGGC (
7
)
1.8
0.0018
E18.5 retina
TGGGTTGTCT (
7
)
1758.9
1.7589
E18.5 retina
GCACAGGAGA
(
2
)
3.6
0.0036
E18.5 retina
GCTGCCTCCT
(
4
)
3.6
0.0036
E18.5 retina
GGGGGGCTGG (
8
)
1.8
0.0018
P0.5 retina
TGGGTTGTCT (
7
)
724.2
0.7242
P0.5 retina
GCCCTGGGGC (
7
)
7.9
0.0079
P0.5 retina
GCACAGGAGA
(
2
)
2
0.002
P0.5 retina
GGGGGGCTGG (
8
)
2
0.002
P2.5 retina
TGGGTTGTCT (
7
)
712.7
0.7127
P2.5 retina
GCACAGGAGA
(
2
)
15.8
0.0158
P2.5 retina
AGGCTGGGCC
3.5
0.0035
P2.5 retina
GCCCTGGGGC (
7
)
1.8
0.0018
P4.5 retina
TGGGTTGTCT (
7
)
754.9
0.7549
P4.5 retina
GCACAGGAGA
(
2
)
21.8
0.0218
P4.5 retina
ACACAGAAGT (
4
)
2
0.002
P4.5 retina
GCCCTGGGGC (
7
)
2
0.002
P6.5 retina
TGGGTTGTCT (
7
)
360.1
0.3601
P6.5 retina
GCACAGGAGA
(
2
)
13.3
0.0133
P6.5 retina
GCCCTGGGGC (
7
)
1.7
0.0017
P10.5 crx- retina
TGGGTTGTCT (
7
)
209.9
0.2099
P10.5 crx- retina
GCCCTGGGGC (
7
)
5.6
0.0056
P10.5 crx- retina
GCACAGGAGA
(
2
)
3.7
0.0037
P10.5 crx- retina
GCTGCCTCCT
(
4
)
1.9
0.0019
P10.5 crx+ retina
TGGGTTGTCT (
7
)
317.2
0.3172
P10.5 crx+ retina
GCACAGGAGA
(
2
)
9.6
0.0096
P10.5 crx+ retina
AGGCTGGGCC
3.8
0.0038
P10.5 crx+ retina
GCCCTGGGGC (
7
)
3.8
0.0038
P10.5 crx+ retina
ACACAGAAGT (
4
)
1.9
0.0019
Adult retinal
TGGGTTGTCT (
7
)
150
0.15
Adult retinal
GCCCTGGGGC (
7
)
9.3
0.0093
Adult retinal
GCACAGGAGA
(
2
)
3.7
0.0037
Adult retinal
AGGCTGGGCC
1.9
0.0019
ONL
TGGGTTGTCT (
7
)
147.5
0.1475
ONL
ACACAGAAGT (
4
)
1.9
0.0019
ONL
AGGCTGGGCC
1.9
0.0019
ONL
GCACAGGAGA
(
2
)
1.9
0.0019
ONL
GCCCTGGGGC (
7
)
1.9
0.0019
ONL
GCTGCCTCCT
(
4
)
1.9
0.0019
ONL
GGGGGGCTGG (
8
)
1.9
0.0019
