Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.131408	Mecp2	methyl CpG binding protein 2	X	X 29.6 cM	17257
Gene Ontology	heterochromatin | methyl-CpG binding | negative regulation of transcription | nucleus
Human Homolog	MECP2[methyl CpG binding protein 2 (Rett syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 64 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGCAAAAA (2) 6.5 0.0065 P8 Cb GC AAGAACCTTT (2) 1.6 0.0016 P8 Cb GC AGTAACTGCA (3) 1.6 0.0016 P8 Cb GC GAAAGAAAAT (12) 1.6 0.0016 Cb medulloblastoma TGTGCAAAAA (2) 18.5 0.0185 Cb medulloblastoma TATTAAAAAA (6) 9.2 0.0092 Cb medulloblastoma AGTAACTGCA (3) 4.6 0.0046 Cb medulloblastoma CCTTTCTAAG (3) 2.3 0.0023 P8 GC+1d culture TGTGCAAAAA (2) 11.4 0.0114 P8 GC+1d culture CCTTTCTAAG (3) 2.3 0.0023 P8 GC+1d culture AGTAACTGCA (3) 1.1 0.0011 P8 GC+1d culture GGGGTGTCCC (6) 1.1 0.0011 P8 GC+1d culture TATTAAAAAA (6) 1.1 0.0011 P8 GC+1d culture TTGTACTCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture TGTGCAAAAA (2) 14.1 0.0141 P8 GC+SHH+1d culture TATTAAAAAA (6) 2.3 0.0023 P8 GC+SHH+1d culture ATTAAACTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture CCAGAGCCAA 1.2 0.0012 P8 GC+SHH+1d culture TTGTACTCCC (3) 1.2 0.0012 3T3 fibroblasts AGTAACTGCA (3) 3.5 0.0035 P1 cortex AGTAACTGCA (3) 4.5 0.0045 Hypothalamus TGTGCAAAAA (2) 9.1 0.0091 Hypothalamus ATTAAACTGA (2) 1.8 0.0018 E12.5 retina AGTAACTGCA (3) 3.8 0.0038 E12.5 retina TGTGCAAAAA (2) 3.8 0.0038 E12.5 retina AAGAACCTTT (2) 1.9 0.0019 E12.5 retina ATTAAACTGA (2) 1.9 0.0019 E12.5 retina GGGGTGTCCC (6) 1.9 0.0019 E12.5 retina TATTAAAAAA (6) 1.9 0.0019 E14.5 retina TGTGCAAAAA (2) 3.6 0.0036 E14.5 retina TATTAAAAAA (6) 1.8 0.0018 E16.5 retina TGTGCAAAAA (2) 7.2 0.0072 E16.5 retina AGTAACTGCA (3) 3.6 0.0036 E16.5 retina AAGAACCTTT (2) 1.8 0.0018 E16.5 retina CCTTTCTAAG (3) 1.8 0.0018 E16.5 retina GAAAGAAAAT (12) 1.8 0.0018 E18.5 retina TATTAAAAAA (6) 3.6 0.0036 E18.5 retina TGTGCAAAAA (2) 3.6 0.0036 P0.5 retina TGTGCAAAAA (2) 9.8 0.0098 P0.5 retina AGTAACTGCA (3) 2 0.002 P0.5 retina CCAGAGCCAA 2 0.002 P0.5 retina TATTAAAAAA (6) 2 0.002 P2.5 retina TGTGCAAAAA (2) 5.3 0.0053 P2.5 retina GAAAGAAAAT (12) 1.8 0.0018 P4.5 retina TGTGCAAAAA (2) 4 0.004 P4.5 retina CCTTTCTAAG (3) 2 0.002 P4.5 retina TATTAAAAAA (6) 2 0.002 P4.5 retina TTGTACTCCC (3) 2 0.002 P6.5 retina TGTGCAAAAA (2) 11.7 0.0117 P6.5 retina CCTTTCTAAG (3) 1.7 0.0017 P6.5 retina GAAAGAAAAT (12) 1.7 0.0017 P10.5 crx- retina AGTAACTGCA (3) 5.6 0.0056 P10.5 crx- retina TGTGCAAAAA (2) 1.9 0.0019 P10.5 crx- retina TTGTACTCCC (3) 1.9 0.0019 P10.5 crx+ retina AGTAACTGCA (3) 5.8 0.0058 P10.5 crx+ retina TGTGCAAAAA (2) 3.8 0.0038 P10.5 crx+ retina CCTTTCTAAG (3) 1.9 0.0019 Adult retinal TGTGCAAAAA (2) 16.7 0.0167 Adult retinal AGTAACTGCA (3) 1.9 0.0019 Adult retinal GGGGTGTCCC (6) 1.9 0.0019 ONL TGTGCAAAAA (2) 11.5 0.0115 ONL TATTAAAAAA (6) 3.8 0.0038 ONL AGTAACTGCA (3) 1.9 0.0019 ONL GAAAGAAAAT (12) 1.9 0.0019