Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.13445	Oxct1	3-oxoacid CoA transferase 1	15		67041
Gene Ontology	3-oxoacid CoA-transferase activity | CoA-transferase activity | extracellular space | metabolism | mitochondrion | mitochondrion | succinyl-CoA metabolism | transferase activity
Human Homolog	OXCT1[3-oxoacid CoA transferase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 144 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATATTTTTTA (4) 14.7 0.0147 P8 Cb GC CCAATGCAGC 9.8 0.0098 P8 Cb GC GGAAAAAAAA (69) 8.2 0.0082 P8 Cb GC AATGCTAAAA 1.6 0.0016 P8 Cb GC AGTGCTAAGA 1.6 0.0016 P8 Cb GC ATATTTTTTT (5) 1.6 0.0016 P8 Cb GC GCACTCTTAG 1.6 0.0016 P8 Cb GC TGTGTGCCCA (7) 1.6 0.0016 Cb medulloblastoma GGAAAAAAAA (69) 41.6 0.0416 Cb medulloblastoma CCAATGCAGC 6.9 0.0069 Cb medulloblastoma ATATTTTTTA (4) 4.6 0.0046 Cb medulloblastoma TCCTCTGGGA (3) 4.6 0.0046 Cb medulloblastoma TGTGTGCCCA (7) 4.6 0.0046 Cb medulloblastoma GCACTCTTAG 2.3 0.0023 P8 GC+1d culture ATATTTTTTA (4) 10.3 0.0103 P8 GC+1d culture GGAAAAAAAA (69) 5.7 0.0057 P8 GC+1d culture CCAATGCAGC 3.4 0.0034 P8 GC+1d culture GAAAAATGTT (5) 2.3 0.0023 P8 GC+1d culture AGTGCTAAGA 1.1 0.0011 P8 GC+1d culture CAGCAGATTT (2) 1.1 0.0011 P8 GC+1d culture GCACTCTTAG 1.1 0.0011 P8 GC+1d culture GGAAGCAGAC (3) 1.1 0.0011 P8 GC+1d culture TCCTCTGGGA (3) 1.1 0.0011 P8 GC+1d culture TGCAAAGCTC (3) 1.1 0.0011 P8 GC+1d culture TGTGTGCCCA (7) 1.1 0.0011 P8 GC+1d culture TTGTGAAGGG 1.1 0.0011 P8 GC+SHH+1d culture ATATTTTTTA (4) 10.5 0.0105 P8 GC+SHH+1d culture GGAAAAAAAA (69) 7 0.007 P8 GC+SHH+1d culture TGTGTGCCCA (7) 3.5 0.0035 P8 GC+SHH+1d culture CCAATGCAGC 2.3 0.0023 P8 GC+SHH+1d culture TGCAAGCTAA 2.3 0.0023 P8 GC+SHH+1d culture AGTCCTGAAT 1.2 0.0012 P8 GC+SHH+1d culture AGTGCTAAGA 1.2 0.0012 P8 GC+SHH+1d culture ATATTTTTTT (5) 1.2 0.0012 P8 GC+SHH+1d culture CAGCAGATTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GAAAAATGTT (5) 1.2 0.0012 P8 GC+SHH+1d culture GCACTCTTAG 1.2 0.0012 P8 GC+SHH+1d culture TGCAAAGCTC (3) 1.2 0.0012 3T3 fibroblasts CCAATGCAGC 17.5 0.0175 3T3 fibroblasts CAGCAGATTT (2) 3.5 0.0035 3T3 fibroblasts GCAGACACAC (8) 3.5 0.0035 3T3 fibroblasts TGCATTTGTG (2) 3.5 0.0035 E15 cortex GGAAAAAAAA (69) 9.9 0.0099 E15 cortex TGTGTGCCCA (7) 9.9 0.0099 E15 cortex CCAATGCAGC 4.9 0.0049 E15 cortex TGCAAAGCTC (3) 4.9 0.0049 P1 cortex CCAATGCAGC 9.1 0.0091 P1 cortex GAAAAATGTT (5) 9.1 0.0091 P1 cortex ATATTTTTTA (4) 4.5 0.0045 P1 cortex GGAAAAAAAA (69) 4.5 0.0045 Hypothalamus GGAAAAAAAA (69) 14.5 0.0145 Hypothalamus GGAAGCAGAC (3) 7.2 0.0072 Hypothalamus ATATTTTTTA (4) 5.4 0.0054 Hypothalamus AGTGCTAAGA 3.6 0.0036 Hypothalamus TGTGTGCCCA (7) 3.6 0.0036 Hypothalamus GCACTCTTAG 1.8 0.0018 Hypothalamus GCAGACACAC (8) 1.8 0.0018 Hypothalamus TCCTCTGGGA (3) 1.8 0.0018 Hypothalamus TGCAAAGCTC (3) 1.8 0.0018 Hypothalamus TTGTGAAGGG 1.8 0.0018 E12.5 retina AGAAGACATA (4) 3.8 0.0038 E12.5 retina AGTGCTAAGA 3.8 0.0038 E12.5 retina AATGCTAAAA 1.9 0.0019 E12.5 retina CAGCAGATTT (2) 1.9 0.0019 E12.5 retina CCAATGCAGC 1.9 0.0019 E12.5 retina GGAAAAAAAA (69) 1.9 0.0019 E14.5 retina ATATTTTTTA (4) 14.6 0.0146 E14.5 retina GGAAAAAAAA (69) 10.9 0.0109 E14.5 retina TGCATTTGTG (2) 5.5 0.0055 E14.5 retina TGTGTGCCCA (7) 3.6 0.0036 E14.5 retina CCAATGCAGC 1.8 0.0018 E14.5 retina GCACTCTTAG 1.8 0.0018 E14.5 retina GGAAGCAGAC (3) 1.8 0.0018 E14.5 retina TTGTGAAGGG 1.8 0.0018 E16.5 retina ATATTTTTTA (4) 10.9 0.0109 E16.5 retina GGAAGCAGAC (3) 3.6 0.0036 E16.5 retina AGTGCTAAGA 1.8 0.0018 E16.5 retina CAGCAGATTT (2) 1.8 0.0018 E16.5 retina CCAATGCAGC 1.8 0.0018 E16.5 retina GCAGACACAC (8) 1.8 0.0018 E16.5 retina GGAAAAAAAA (69) 1.8 0.0018 E16.5 retina TGCATTTGTG (2) 1.8 0.0018 E16.5 retina TGTGTGCCCA (7) 1.8 0.0018 E18.5 retina GGAAAAAAAA (69) 16.4 0.0164 E18.5 retina ATATTTTTTA (4) 3.6 0.0036 E18.5 retina GAAAGCAGAG (5) 3.6 0.0036 E18.5 retina AATGCTAAAA 1.8 0.0018 E18.5 retina AGTGCTAAGA 1.8 0.0018 E18.5 retina GAAAAATGTT (5) 1.8 0.0018 P0.5 retina GGAAAAAAAA (69) 13.7 0.0137 P0.5 retina TGTGTGCCCA (7) 5.9 0.0059 P0.5 retina TGCAAAGCTC (3) 3.9 0.0039 P0.5 retina AGAAGACATA (4) 2 0.002 P0.5 retina CAGCAGATTT (2) 2 0.002 P0.5 retina CCAATGCAGC 2 0.002 P0.5 retina GCACTCTTAG 2 0.002 P2.5 retina GGAAAAAAAA (69) 7 0.007 P2.5 retina AGTGCTAAGA 3.5 0.0035 P2.5 retina AATGCTAAAA 1.8 0.0018 P2.5 retina ATATTTTTTA (4) 1.8 0.0018 P2.5 retina CAGCAGATTT (2) 1.8 0.0018 P2.5 retina CCAATGCAGC 1.8 0.0018 P2.5 retina GGAAGCAGAC (3) 1.8 0.0018 P2.5 retina TGCAAAGCTC (3) 1.8 0.0018 P2.5 retina TGCATTTGTG (2) 1.8 0.0018 P2.5 retina TGTGTGCCCA (7) 1.8 0.0018 P4.5 retina GGAAAAAAAA (69) 13.9 0.0139 P4.5 retina ATATTTTTTA (4) 9.9 0.0099 P4.5 retina AGTCCTGAAT 2 0.002 P4.5 retina CAGCAGATTT (2) 2 0.002 P4.5 retina CCAATGCAGC 2 0.002 P4.5 retina TGCAAGCTAA 2 0.002 P4.5 retina TGTGTGCCCA (7) 2 0.002 P6.5 retina GGAAAAAAAA (69) 13.3 0.0133 P6.5 retina ATATTTTTTA (4) 6.7 0.0067 P6.5 retina CCAATGCAGC 6.7 0.0067 P6.5 retina AATGCTAAAA 1.7 0.0017 P6.5 retina AGTGCTAAGA 1.7 0.0017 P6.5 retina GCACTCTTAG 1.7 0.0017 P10.5 crx- retina ATATTTTTTA (4) 3.7 0.0037 P10.5 crx- retina CCAATGCAGC 3.7 0.0037 P10.5 crx- retina GGAAAAAAAA (69) 3.7 0.0037 P10.5 crx- retina AATGCTAAAA 1.9 0.0019 P10.5 crx- retina CAGCAGATTT (2) 1.9 0.0019 P10.5 crx- retina GGAAGCAGAC (3) 1.9 0.0019 P10.5 crx- retina TGTGTGCCCA (7) 1.9 0.0019 P10.5 crx+ retina GGAAAAAAAA (69) 15.4 0.0154 P10.5 crx+ retina GAAAAATGTT (5) 3.8 0.0038 P10.5 crx+ retina TGTGTGCCCA (7) 3.8 0.0038 P10.5 crx+ retina AGAAGACATA (4) 1.9 0.0019 P10.5 crx+ retina CCAATGCAGC 1.9 0.0019 P10.5 crx+ retina TGCAAAGCTC (3) 1.9 0.0019 Adult retinal GGAAAAAAAA (69) 5.6 0.0056 Adult retinal CAGCAGATTT (2) 3.7 0.0037 Adult retinal GGAAGCAGAC (3) 3.7 0.0037 Adult retinal TGTGTGCCCA (7) 3.7 0.0037 Adult retinal CCAATGCAGC 1.9 0.0019 Adult retinal GCAGACACAC (8) 1.9 0.0019 Adult retinal TCCTCTGGGA (3) 1.9 0.0019 ONL GGAAAAAAAA (69) 17.2 0.0172 ONL ATATTTTTTA (4) 7.7 0.0077 ONL GGAAGCAGAC (3) 7.7 0.0077 ONL TCCTCTGGGA (3) 1.9 0.0019 ONL TGTGTGCCCA (7) 1.9 0.0019