Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.134516	Otx2	orthodenticle homolog 2 (Drosophila)	14	14 (14 19.0 cM)	18424
Gene Ontology	anterior/posterior pattern formation | cell fate commitment | central nervous system development | development | DNA binding | dorsal/ventral pattern formation | eye photoreceptor cell fate commitment | forebrain development | forebrain development | midbrain development | midbrain development | nucleus | organogenesis | protein binding | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | transcription factor activity | transcription regulator activity
Human Homolog	OTX2[orthodenticle homolog 2 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

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SAGE Tags

Total 38 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCAACAGGT (2) 4.9 0.0049 P8 Cb GC GACTGTGGAT (2) 1.6 0.0016 Cb medulloblastoma ACCAACAGGT (2) 2.3 0.0023 P8 GC+1d culture ACCAACAGGT (2) 4.6 0.0046 P8 GC+1d culture GCCTTCAAAG (2) 1.1 0.0011 P8 GC+SHH+1d culture ACCAACAGGT (2) 4.7 0.0047 Hypothalamus GAAATTCCAG 1.8 0.0018 E12.5 retina ACCAACAGGT (2) 5.6 0.0056 E14.5 retina ACCAACAGGT (2) 12.8 0.0128 E16.5 retina ACCAACAGGT (2) 36.2 0.0362 E16.5 retina AGGGAAAGAG (5) 3.6 0.0036 E16.5 retina CAACCAAATA 3.6 0.0036 E16.5 retina GCCTTCAAAG (2) 1.8 0.0018 E18.5 retina ACCAACAGGT (2) 12.7 0.0127 E18.5 retina GACTGTGGAT (2) 1.8 0.0018 P0.5 retina ACCAACAGGT (2) 19.6 0.0196 P2.5 retina ACCAACAGGT (2) 26.4 0.0264 P2.5 retina CAACCAAATA 3.5 0.0035 P2.5 retina GACTGTGGAT (2) 1.8 0.0018 P4.5 retina ACCAACAGGT (2) 59.4 0.0594 P4.5 retina CAACCAAATA 5.9 0.0059 P4.5 retina GAAATTCCAG 2 0.002 P4.5 retina GCCTTCAAAG (2) 2 0.002 P6.5 retina ACCAACAGGT (2) 56.7 0.0567 P6.5 retina GAAATTCCAG 3.3 0.0033 P6.5 retina GCCTTCAAAG (2) 3.3 0.0033 P6.5 retina CAACCAAATA 1.7 0.0017 P10.5 crx- retina ACCAACAGGT (2) 50.2 0.0502 P10.5 crx- retina GCCTTCAAAG (2) 3.7 0.0037 P10.5 crx+ retina ACCAACAGGT (2) 17.3 0.0173 P10.5 crx+ retina AGGGAAGAGG (6) 1.9 0.0019 P10.5 crx+ retina CAACCAAATA 1.9 0.0019 Adult retinal ACCAACAGGT (2) 13 0.013 Adult retinal AGGGAAGAGG (6) 1.9 0.0019 Adult retinal GCCTTCAAAG (2) 1.9 0.0019 ONL ACCAACAGGT (2) 9.6 0.0096 ONL AGGGAAAGAG (5) 1.9 0.0019 ONL AGGGAAGAGG (6) 1.9 0.0019