Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.135581	Rpo1-4	RNA polymerase 1-4	6	6 31.2 cM	20019
Gene Ontology	DNA binding | DNA-directed RNA polymerase activity | DNA-directed RNA polymerase I complex | nucleus | protein binding | transcription | transferase activity
Human Homolog	POLR1A[polymerase (RNA) I polypeptide A, 194kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTCAAAAAA (12) 3.3 0.0033 P8 Cb GC GTGGCCAGTG (3) 3.3 0.0033 P8 Cb GC TATGCTCCTT 3.3 0.0033 P8 Cb GC ATGCAGTTTC (2) 1.6 0.0016 P8 Cb GC GCTGCTGAAA (4) 1.6 0.0016 Cb medulloblastoma ATGCAGTTTC (2) 6.9 0.0069 Cb medulloblastoma GCTGGAACTG (6) 4.6 0.0046 Cb medulloblastoma GTGGCCAGTG (3) 4.6 0.0046 P8 GC+1d culture GTGGCCAGTG (3) 3.4 0.0034 P8 GC+1d culture GCTGGAACTG (6) 2.3 0.0023 P8 GC+1d culture TATGCTCCTT 2.3 0.0023 P8 GC+SHH+1d culture GCTGGAACTG (6) 5.9 0.0059 P8 GC+SHH+1d culture CCTCAAAAAA (12) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCTGAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture GTGGCCAGTG (3) 1.2 0.0012 P8 GC+SHH+1d culture TATGCTCCTT 1.2 0.0012 3T3 fibroblasts GTGGCCAGTG (3) 17.5 0.0175 3T3 fibroblasts GAAACCAGAT (5) 3.5 0.0035 E15 cortex GTGGCCAGTG (3) 19.8 0.0198 E15 cortex AGATGGCCAT (4) 4.9 0.0049 E15 cortex GAAACCAGAT (5) 4.9 0.0049 E15 cortex GCTGGAACTG (6) 4.9 0.0049 P1 cortex GCTGGAACTG (6) 9.1 0.0091 P1 cortex GTGGCCAGTG (3) 9.1 0.0091 Hypothalamus GCTGCTGAAA (4) 5.4 0.0054 Hypothalamus GCTGGAACTG (6) 1.8 0.0018 E12.5 retina GCTGGAACTG (6) 16.9 0.0169 E12.5 retina CCTCAAAAAA (12) 5.6 0.0056 E12.5 retina AGATGGCCAT (4) 1.9 0.0019 E12.5 retina GCTGCTGAAA (4) 1.9 0.0019 E12.5 retina GGGGTTTGGA (2) 1.9 0.0019 E12.5 retina TATGCTCCTT 1.9 0.0019 E14.5 retina GCTGGAACTG (6) 5.5 0.0055 E14.5 retina GGGGTTTGGA (2) 1.8 0.0018 E14.5 retina GTGGCCAGTG (3) 1.8 0.0018 E16.5 retina GCTGGAACTG (6) 7.2 0.0072 E16.5 retina AGATGGCCAT (4) 1.8 0.0018 E16.5 retina CCTCAAAAAA (12) 1.8 0.0018 E16.5 retina TATGCTCCTT 1.8 0.0018 E18.5 retina GCTGGAACTG (6) 5.5 0.0055 E18.5 retina AGATGGCCAT (4) 1.8 0.0018 P0.5 retina GCTGGAACTG (6) 2 0.002 P0.5 retina GTGGCCAGTG (3) 2 0.002 P0.5 retina TATGCTCCTT 2 0.002 P0.5 retina TGGTCAGGCA (3) 2 0.002 P2.5 retina CCTCAAAAAA (12) 3.5 0.0035 P2.5 retina GCTGGAACTG (6) 3.5 0.0035 P2.5 retina GCTGCTGAAA (4) 1.8 0.0018 P2.5 retina TGGTCAGGCA (3) 1.8 0.0018 P4.5 retina GCTGGAACTG (6) 4 0.004 P4.5 retina CCTCAAAAAA (12) 2 0.002 P6.5 retina GCTGGAACTG (6) 5 0.005 P6.5 retina CCTCAAAAAA (12) 1.7 0.0017 P6.5 retina GAAACCAGAT (5) 1.7 0.0017 P6.5 retina TATGCTCCTT 1.7 0.0017 P10.5 crx- retina AGATGGCCAT (4) 1.9 0.0019 P10.5 crx- retina GCTGGAACTG (6) 1.9 0.0019 P10.5 crx+ retina AGATGGCCAT (4) 1.9 0.0019 P10.5 crx+ retina CCTCAAAAAA (12) 1.9 0.0019 P10.5 crx+ retina GCTGCTGAAA (4) 1.9 0.0019 P10.5 crx+ retina GCTGGAACTG (6) 1.9 0.0019 P10.5 crx+ retina GGGGTTTGGA (2) 1.9 0.0019 P10.5 crx+ retina GTGGCCAGTG (3) 1.9 0.0019 Adult retinal GCTGGAACTG (6) 3.7 0.0037 Adult retinal GAAACCAGAT (5) 1.9 0.0019 Adult retinal GTGGCCAGTG (3) 1.9 0.0019 Adult retinal TGGTCAGGCA (3) 1.9 0.0019 Adult retinal TTTCTGGAGA 1.9 0.0019 ONL TTTCTGGAGA 5.7 0.0057 ONL CCTCAAAAAA (12) 1.9 0.0019 ONL GTGGCCAGTG (3) 1.9 0.0019