Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1387	Rab11a	RAB11a, member RAS oncogene family	9		53869
Gene Ontology	DNA binding | GTP binding | protein transport | regulation of transcription, DNA-dependent | small GTPase mediated signal transduction | two-component signal transduction system (phosphorelay)
Human Homolog	RAB11A[RAB11A, member RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTATGGCTTC 6.5 0.0065 P8 Cb GC CTCTGTATTT (4) 3.3 0.0033 P8 Cb GC TTCTCAGAAG (6) 3.3 0.0033 P8 Cb GC ATGTGTGGGG 1.6 0.0016 P8 Cb GC GAAGCCTGTC (4) 1.6 0.0016 P8 Cb GC TTCCGCCCAC (3) 1.6 0.0016 Cb medulloblastoma ATGGGGATTC (3) 6.9 0.0069 Cb medulloblastoma CTATGGCTTC 6.9 0.0069 Cb medulloblastoma AGGACTGCAA (3) 2.3 0.0023 Cb medulloblastoma CTCTGTATTT (4) 2.3 0.0023 P8 GC+1d culture CTATGGCTTC 9.1 0.0091 P8 GC+1d culture CTCTGTATTT (4) 8 0.008 P8 GC+1d culture TTCCGCCCAC (3) 5.7 0.0057 P8 GC+1d culture AGGACTGCAA (3) 4.6 0.0046 P8 GC+1d culture ATGGGGATTC (3) 2.3 0.0023 P8 GC+1d culture CTGGTTGCTG (6) 2.3 0.0023 P8 GC+1d culture TTCTCAGAAG (6) 2.3 0.0023 P8 GC+1d culture ATGTGTGGGG 1.1 0.0011 P8 GC+1d culture TCTTAAGTCT (2) 1.1 0.0011 P8 GC+SHH+1d culture CTATGGCTTC 10.5 0.0105 P8 GC+SHH+1d culture CTCTGTATTT (4) 5.9 0.0059 P8 GC+SHH+1d culture ATGTGTGGGG 2.3 0.0023 P8 GC+SHH+1d culture GAAACAGCAA (3) 2.3 0.0023 P8 GC+SHH+1d culture TCTTAAGTCT (2) 2.3 0.0023 P8 GC+SHH+1d culture TTCCGCCCAC (3) 2.3 0.0023 P8 GC+SHH+1d culture AGGACTGCAA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGGTTGCTG (6) 1.2 0.0012 P8 GC+SHH+1d culture TGGGACACAG (6) 1.2 0.0012 3T3 fibroblasts CTGGTTGCTG (6) 3.5 0.0035 3T3 fibroblasts CTTGTGGGCA (2) 3.5 0.0035 3T3 fibroblasts TTCTCAGAAG (6) 3.5 0.0035 P1 cortex CTCTGTATTT (4) 4.5 0.0045 Hypothalamus CTGGTTGCTG (6) 7.2 0.0072 Hypothalamus ATGTGTGGGG 5.4 0.0054 Hypothalamus CTATGGCTTC 3.6 0.0036 Hypothalamus AGCAATAAAA 1.8 0.0018 Hypothalamus ATGGGGATTC (3) 1.8 0.0018 Hypothalamus CTCTGTATTT (4) 1.8 0.0018 Hypothalamus TTCTCAGAAG (6) 1.8 0.0018 E12.5 retina CTATGGCTTC 15 0.015 E12.5 retina CTCTGTATTT (4) 3.8 0.0038 E12.5 retina AGCAATAAAA 1.9 0.0019 E12.5 retina GAAACAGCAA (3) 1.9 0.0019 E12.5 retina TTCTCAGAAG (6) 1.9 0.0019 E14.5 retina CTATGGCTTC 7.3 0.0073 E14.5 retina AAAAAAAACT (7) 1.8 0.0018 E14.5 retina ATGGGGATTC (3) 1.8 0.0018 E14.5 retina ATGTGTGGGG 1.8 0.0018 E14.5 retina CTCTGTATTT (4) 1.8 0.0018 E14.5 retina CTGGTTGCTG (6) 1.8 0.0018 E14.5 retina TAATAACTAG 1.8 0.0018 E16.5 retina CTATGGCTTC 9.1 0.0091 E16.5 retina ATGTGTGGGG 1.8 0.0018 E16.5 retina CTCTGTATTT (4) 1.8 0.0018 E16.5 retina CTGGTTGCTG (6) 1.8 0.0018 E16.5 retina GAAACAGCAA (3) 1.8 0.0018 E16.5 retina TGGGACACAG (6) 1.8 0.0018 E18.5 retina CTATGGCTTC 12.7 0.0127 E18.5 retina CTCTGTATTT (4) 3.6 0.0036 E18.5 retina TTCTCAGAAG (6) 3.6 0.0036 E18.5 retina ATGGGGATTC (3) 1.8 0.0018 E18.5 retina TAATAACTAG 1.8 0.0018 E18.5 retina TGGGACACAG (6) 1.8 0.0018 P0.5 retina CTATGGCTTC 7.9 0.0079 P0.5 retina TTCCGCCCAC (3) 5.9 0.0059 P0.5 retina CTTGTGGGCA (2) 3.9 0.0039 P0.5 retina ATGGGGATTC (3) 2 0.002 P0.5 retina ATGTGTGGGG 2 0.002 P0.5 retina CTCTGTATTT (4) 2 0.002 P0.5 retina CTGGTTGCTG (6) 2 0.002 P0.5 retina GAAACAGCAA (3) 2 0.002 P2.5 retina CTCTGTATTT (4) 7 0.007 P2.5 retina ATGTGTGGGG 3.5 0.0035 P2.5 retina CTATGGCTTC 3.5 0.0035 P2.5 retina GAAACAGCAA (3) 1.8 0.0018 P2.5 retina TCTTAAGTCT (2) 1.8 0.0018 P2.5 retina TTCTCAGAAG (6) 1.8 0.0018 P4.5 retina CTATGGCTTC 7.9 0.0079 P4.5 retina AAAAAAAACT (7) 2 0.002 P4.5 retina AGCAATAAAA 2 0.002 P4.5 retina GAAACAGCAA (3) 2 0.002 P6.5 retina CTATGGCTTC 10 0.01 P6.5 retina ATGTGTGGGG 3.3 0.0033 P6.5 retina GAAACAGCAA (3) 3.3 0.0033 P6.5 retina AGCAATAAAA 1.7 0.0017 P10.5 crx- retina CTGGTTGCTG (6) 7.4 0.0074 P10.5 crx- retina CTATGGCTTC 5.6 0.0056 P10.5 crx- retina TCTTAAGTCT (2) 3.7 0.0037 P10.5 crx- retina ATGGGGATTC (3) 1.9 0.0019 P10.5 crx- retina ATGTGTGGGG 1.9 0.0019 P10.5 crx- retina GAAGCCTGTC (4) 1.9 0.0019 P10.5 crx- retina TGGGACACAG (6) 1.9 0.0019 P10.5 crx+ retina ATGTGTGGGG 5.8 0.0058 P10.5 crx+ retina CTATGGCTTC 3.8 0.0038 P10.5 crx+ retina CTGGTTGCTG (6) 3.8 0.0038 P10.5 crx+ retina ATGGGGATTC (3) 1.9 0.0019 P10.5 crx+ retina CTCTGTATTT (4) 1.9 0.0019 P10.5 crx+ retina GAAACAGCAA (3) 1.9 0.0019 P10.5 crx+ retina TTCCGCCCAC (3) 1.9 0.0019 Adult retinal TGGGACACAG (6) 1.9 0.0019 ONL GAAACAGCAA (3) 3.8 0.0038 ONL ATGGGGATTC (3) 1.9 0.0019 ONL GAAGCCTGTC (4) 1.9 0.0019 ONL TAATAACTAG 1.9 0.0019 ONL TTCTCAGAAG (6) 1.9 0.0019