Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.138792	Chd7	chromodomain helicase DNA binding protein 7	4		320790
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Human Homolog	CHD7[chromodomain helicase DNA binding protein 7]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 110 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATATGCAAAA (3) 6.5 0.0065 P8 Cb GC ATAGCAGTTT (5) 4.9 0.0049 P8 Cb GC GGAGGTGGAG (6) 4.9 0.0049 P8 Cb GC TCTCAAAAAA (22) 4.9 0.0049 P8 Cb GC GAGCCGCCAT (3) 1.6 0.0016 Cb medulloblastoma TCTCAAAAAA (22) 9.2 0.0092 Cb medulloblastoma ATAGCAGTTT (5) 6.9 0.0069 Cb medulloblastoma AAAAACATAA (5) 4.6 0.0046 Cb medulloblastoma ATATGCAAAA (3) 4.6 0.0046 Cb medulloblastoma GAGCCGCCAT (3) 4.6 0.0046 P8 GC+1d culture GGAGGTGGAG (6) 33.1 0.0331 P8 GC+1d culture ATAGCAGTTT (5) 6.8 0.0068 P8 GC+1d culture TTTCTACCTC 5.7 0.0057 P8 GC+1d culture ATATGCAAAA (3) 4.6 0.0046 P8 GC+1d culture TCTCAAAAAA (22) 3.4 0.0034 P8 GC+1d culture AAAAACATAA (5) 2.3 0.0023 P8 GC+1d culture GAGCCGCCAT (3) 1.1 0.0011 P8 GC+1d culture TCTTTTTAAG 1.1 0.0011 P8 GC+SHH+1d culture GGAGGTGGAG (6) 14.1 0.0141 P8 GC+SHH+1d culture ATATGCAAAA (3) 9.4 0.0094 P8 GC+SHH+1d culture AAAAACATAA (5) 7 0.007 P8 GC+SHH+1d culture ATAGCAGTTT (5) 5.9 0.0059 P8 GC+SHH+1d culture TCTCAAAAAA (22) 3.5 0.0035 P8 GC+SHH+1d culture AAACTGAAGA (2) 2.3 0.0023 P8 GC+SHH+1d culture GAGCCGCCAT (3) 2.3 0.0023 P8 GC+SHH+1d culture TCTTTTTAAG 2.3 0.0023 P8 GC+SHH+1d culture TTTCTACCTC 2.3 0.0023 3T3 fibroblasts GGAGGTGGAG (6) 7 0.007 E15 cortex GGAGGTGGAG (6) 14.8 0.0148 Hypothalamus AAACTGAAGA (2) 9.1 0.0091 Hypothalamus AAAAACATAA (5) 5.4 0.0054 Hypothalamus GGAGGTGGAG (6) 5.4 0.0054 Hypothalamus TCTCAAAAAA (22) 5.4 0.0054 Hypothalamus GAGCCGCCAT (3) 3.6 0.0036 Hypothalamus ATATGCAAAA (3) 1.8 0.0018 E12.5 retina ATATGCAAAA (3) 9.4 0.0094 E12.5 retina AAACTGAAGA (2) 5.6 0.0056 E12.5 retina TCTTTTTAAG 5.6 0.0056 E12.5 retina GAGCCGCCAT (3) 3.8 0.0038 E14.5 retina ATATGCAAAA (3) 10.9 0.0109 E14.5 retina GAGCCGCCAT (3) 9.1 0.0091 E14.5 retina AAACTGAAGA (2) 3.6 0.0036 E14.5 retina ATAGCAGTTT (5) 3.6 0.0036 E14.5 retina TCTCAAAAAA (22) 3.6 0.0036 E14.5 retina GGAGGTGGAG (6) 1.8 0.0018 E14.5 retina GGCTTCCCTC (6) 1.8 0.0018 E14.5 retina TCTTTTTAAG 1.8 0.0018 E16.5 retina GAGCCGCCAT (3) 7.2 0.0072 E16.5 retina AAACTGAAGA (2) 5.4 0.0054 E16.5 retina GGAGGTGGAG (6) 5.4 0.0054 E16.5 retina ATAGCAGTTT (5) 3.6 0.0036 E16.5 retina TCTCAAAAAA (22) 3.6 0.0036 E16.5 retina TCTTTTTAAG 3.6 0.0036 E16.5 retina ATATGCAAAA (3) 1.8 0.0018 E18.5 retina GAGCCGCCAT (3) 7.3 0.0073 E18.5 retina ATATGCAAAA (3) 5.5 0.0055 E18.5 retina TCTCAAAAAA (22) 5.5 0.0055 E18.5 retina GGAGGTGGAG (6) 3.6 0.0036 E18.5 retina ATAGCAGTTT (5) 1.8 0.0018 E18.5 retina TCTTTTTAAG 1.8 0.0018 P0.5 retina GAGCCGCCAT (3) 7.9 0.0079 P0.5 retina ATAGCAGTTT (5) 5.9 0.0059 P0.5 retina GGAGGTGGAG (6) 5.9 0.0059 P0.5 retina ATATGCAAAA (3) 2 0.002 P0.5 retina TTTCTACCTC 2 0.002 P2.5 retina ATATGCAAAA (3) 12.3 0.0123 P2.5 retina ATAGCAGTTT (5) 5.3 0.0053 P2.5 retina GGAGGTGGAG (6) 3.5 0.0035 P2.5 retina AAACTGAAGA (2) 1.8 0.0018 P2.5 retina GAGCCGCCAT (3) 1.8 0.0018 P2.5 retina TCTCAAAAAA (22) 1.8 0.0018 P2.5 retina TCTTTTTAAG 1.8 0.0018 P4.5 retina ATATGCAAAA (3) 7.9 0.0079 P4.5 retina GAGCCGCCAT (3) 5.9 0.0059 P4.5 retina GGAGGTGGAG (6) 5.9 0.0059 P4.5 retina AAAAACATAA (5) 2 0.002 P4.5 retina ATAGCAGTTT (5) 2 0.002 P4.5 retina GGCTTCCCTC (6) 2 0.002 P4.5 retina TCTCAAAAAA (22) 2 0.002 P4.5 retina TCTTTTTAAG 2 0.002 P6.5 retina ATATGCAAAA (3) 5 0.005 P6.5 retina AAACTGAAGA (2) 3.3 0.0033 P6.5 retina GGAGGTGGAG (6) 3.3 0.0033 P6.5 retina TCTCAAAAAA (22) 3.3 0.0033 P6.5 retina TCTTTTTAAG 3.3 0.0033 P10.5 crx- retina GGAGGTGGAG (6) 7.4 0.0074 P10.5 crx- retina AAACTGAAGA (2) 5.6 0.0056 P10.5 crx- retina ATAGCAGTTT (5) 3.7 0.0037 P10.5 crx- retina GAGCCGCCAT (3) 1.9 0.0019 P10.5 crx+ retina ATAGCAGTTT (5) 5.8 0.0058 P10.5 crx+ retina GGAGGTGGAG (6) 5.8 0.0058 P10.5 crx+ retina TCTCAAAAAA (22) 3.8 0.0038 P10.5 crx+ retina AAACTGAAGA (2) 1.9 0.0019 P10.5 crx+ retina ATATGCAAAA (3) 1.9 0.0019 P10.5 crx+ retina GAGCCGCCAT (3) 1.9 0.0019 P10.5 crx+ retina TTTCTACCTC 1.9 0.0019 Adult retinal TCTCAAAAAA (22) 7.4 0.0074 Adult retinal AAACTGAAGA (2) 3.7 0.0037 Adult retinal ATAGCAGTTT (5) 3.7 0.0037 Adult retinal ATATGCAAAA (3) 3.7 0.0037 Adult retinal GGAGGTGGAG (6) 1.9 0.0019 Adult retinal GGCTTCCCTC (6) 1.9 0.0019 ONL AAACTGAAGA (2) 13.4 0.0134 ONL TCTCAAAAAA (22) 7.7 0.0077 ONL ATATGCAAAA (3) 5.7 0.0057 ONL ATAGCAGTTT (5) 3.8 0.0038 ONL GGAGGTGGAG (6) 3.8 0.0038 ONL AAAAACATAA (5) 1.9 0.0019 ONL TCTTTTTAAG 1.9 0.0019 ONL TTTCTACCTC 1.9 0.0019