Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.14022	Cox8a	cytochrome c oxidase, subunit VIIIa	19		12868
Gene Ontology	cytochrome-c oxidase activity | electron transport | inner membrane | integral to membrane | mitochondrion | oxidoreductase activity | respiratory chain complex IV (sensu Eukarya)
Human Homolog	COX8A[cytochrome c oxidase subunit 8A (ubiquitous)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 151 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TATTGGCTCT 83.2 0.0832 P8 Cb GC GTGACAACTG (7) 9.8 0.0098 P8 Cb GC TATTGGCTTT (2) 4.9 0.0049 P8 Cb GC TATTGGCTCC (3) 3.3 0.0033 P8 Cb GC ATCAAGGTGG (2) 1.6 0.0016 P8 Cb GC GTGCCGCGGG 1.6 0.0016 P8 Cb GC TATTGGCCCT 1.6 0.0016 Cb medulloblastoma TATTGGCTCT 168.8 0.1688 Cb medulloblastoma GCCACCCTCT (3) 11.6 0.0116 Cb medulloblastoma TATTGGCTCC (3) 9.2 0.0092 Cb medulloblastoma GTGACAACTG (7) 6.9 0.0069 Cb medulloblastoma TCTGTCCTGA (4) 6.9 0.0069 Cb medulloblastoma TTGCCTGCAT (2) 4.6 0.0046 Cb medulloblastoma GTGAAAAGAA (3) 2.3 0.0023 Cb medulloblastoma GTTACAACTG (3) 2.3 0.0023 Cb medulloblastoma TTGGCTGGAT (2) 2.3 0.0023 Cb medulloblastoma TTTTAAAAAT (4) 2.3 0.0023 P8 GC+1d culture TATTGGCTCT 98.2 0.0982 P8 GC+1d culture GTGACAACTG (7) 12.6 0.0126 P8 GC+1d culture TATTGGCTCC (3) 5.7 0.0057 P8 GC+1d culture GCCACCCTCT (3) 4.6 0.0046 P8 GC+1d culture GTGCCGGGGC (3) 2.3 0.0023 P8 GC+SHH+1d culture TATTGGCTCT 76.1 0.0761 P8 GC+SHH+1d culture GTGACAACTG (7) 19.9 0.0199 P8 GC+SHH+1d culture GTTACAACTG (3) 3.5 0.0035 P8 GC+SHH+1d culture GTGCCGGGGC (3) 2.3 0.0023 P8 GC+SHH+1d culture TATTGGCTCC (3) 2.3 0.0023 P8 GC+SHH+1d culture ATCAAGGTGG (2) 1.2 0.0012 P8 GC+SHH+1d culture TATGGCTCTG (5) 1.2 0.0012 P8 GC+SHH+1d culture TCTGTCCTGA (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGGCTGGAT (2) 1.2 0.0012 3T3 fibroblasts TTGGCTGGAT (2) 38.6 0.0386 3T3 fibroblasts TATTGGCTCT 24.5 0.0245 3T3 fibroblasts GTGCCGCGGG 3.5 0.0035 3T3 fibroblasts TTGCCTGCAT (2) 3.5 0.0035 E15 cortex TATTGGCTCT 19.8 0.0198 E15 cortex GTGACAACTG (7) 9.9 0.0099 E15 cortex GTGCCGGGGC (3) 4.9 0.0049 E15 cortex TATTGGCTCC (3) 4.9 0.0049 P1 cortex TATTGGCTCT 27.3 0.0273 P1 cortex GTGACAACTG (7) 9.1 0.0091 P1 cortex GTGCCGGGGC (3) 4.5 0.0045 P1 cortex TATTGGCTCC (3) 4.5 0.0045 P1 cortex TTTTAAAAAT (4) 4.5 0.0045 Hypothalamus TATTGGCTCT 132.2 0.1322 Hypothalamus GCCACCCTCT (3) 16.3 0.0163 Hypothalamus ATCAAGGTGG (2) 7.2 0.0072 Hypothalamus TATTGGCTCC (3) 7.2 0.0072 Hypothalamus GTTACAACTG (3) 5.4 0.0054 Hypothalamus GTGCCGCGGG 3.6 0.0036 Hypothalamus TTGCCTGCAT (2) 3.6 0.0036 Hypothalamus GTGACAACTG (7) 1.8 0.0018 Hypothalamus TCTGTCCTGA (4) 1.8 0.0018 Hypothalamus TTGGCTGGAT (2) 1.8 0.0018 E12.5 retina TATTGGCTCT 63.8 0.0638 E12.5 retina GTGACAACTG (7) 7.5 0.0075 E12.5 retina GTGCCGGGGC (3) 1.9 0.0019 E12.5 retina GTGGCATACA (4) 1.9 0.0019 E12.5 retina TATTGGCTCC (3) 1.9 0.0019 E12.5 retina TTGCCTGCAT (2) 1.9 0.0019 E14.5 retina TATTGGCTCT 72.9 0.0729 E14.5 retina GTGACAACTG (7) 25.5 0.0255 E14.5 retina GTGCCGGGGC (3) 3.6 0.0036 E14.5 retina ATCAAGGTGG (2) 1.8 0.0018 E14.5 retina GTGGCATACA (4) 1.8 0.0018 E16.5 retina TATTGGCTCT 54.3 0.0543 E16.5 retina GTGACAACTG (7) 18.1 0.0181 E16.5 retina ATCAAGGTGG (2) 3.6 0.0036 E16.5 retina GTGAAAAGAA (3) 3.6 0.0036 E16.5 retina TATTGGCTCC (3) 3.6 0.0036 E16.5 retina GTGCCGGGGC (3) 1.8 0.0018 E16.5 retina TCTGTCCTGA (4) 1.8 0.0018 E16.5 retina TTGCCTGCAT (2) 1.8 0.0018 E18.5 retina TATTGGCTCT 92.8 0.0928 E18.5 retina GTGACAACTG (7) 30.9 0.0309 E18.5 retina ATCAAGGTGG (2) 3.6 0.0036 E18.5 retina GTGCCGGGGC (3) 3.6 0.0036 E18.5 retina TATTGGCTCC (3) 3.6 0.0036 E18.5 retina TTTTAAAAAT (4) 3.6 0.0036 E18.5 retina GTGGCATACA (4) 1.8 0.0018 E18.5 retina GTTACAACTG (3) 1.8 0.0018 E18.5 retina TATGGCTCTG (5) 1.8 0.0018 E18.5 retina TATTGGCTTT (2) 1.8 0.0018 P0.5 retina TATTGGCTCT 70.7 0.0707 P0.5 retina GTGACAACTG (7) 5.9 0.0059 P0.5 retina TCTGTCCTGA (4) 3.9 0.0039 P0.5 retina GTGCCGCGGG 2 0.002 P0.5 retina TATTGGCTTT (2) 2 0.002 P2.5 retina TATTGGCTCT 70.4 0.0704 P2.5 retina GTGACAACTG (7) 15.8 0.0158 P2.5 retina TCTGTCCTGA (4) 12.3 0.0123 P2.5 retina TATTGGCTCC (3) 3.5 0.0035 P2.5 retina GCCACCCTCT (3) 1.8 0.0018 P2.5 retina GTGAAAAGAA (3) 1.8 0.0018 P2.5 retina GTGCCGGGGC (3) 1.8 0.0018 P2.5 retina GTTACAACTG (3) 1.8 0.0018 P2.5 retina TATTGGCTTT (2) 1.8 0.0018 P2.5 retina TTGCCTGCAT (2) 1.8 0.0018 P2.5 retina TTTTAAAAAT (4) 1.8 0.0018 P4.5 retina TATTGGCTCT 95.1 0.0951 P4.5 retina GTGACAACTG (7) 19.8 0.0198 P4.5 retina TCTGTCCTGA (4) 11.9 0.0119 P4.5 retina TATTGGCTCC (3) 5.9 0.0059 P4.5 retina GTTACAACTG (3) 4 0.004 P4.5 retina TTGCCTGCAT (2) 4 0.004 P4.5 retina GTGCCGGGGC (3) 2 0.002 P4.5 retina TATTGGCCCT 2 0.002 P4.5 retina TATTGGCTTT (2) 2 0.002 P4.5 retina TTGGCTGGAT (2) 2 0.002 P4.5 retina TTTTAAAAAT (4) 2 0.002 P6.5 retina TATTGGCTCT 166.7 0.1667 P6.5 retina GTGACAACTG (7) 8.3 0.0083 P6.5 retina TCTGTCCTGA (4) 5 0.005 P6.5 retina ATCAAGGTGG (2) 3.3 0.0033 P6.5 retina TATTGGCTCC (3) 3.3 0.0033 P6.5 retina TTTTAAAAAT (4) 1.7 0.0017 P10.5 crx- retina TATTGGCTCT 245.2 0.2452 P10.5 crx- retina TATTGGCTCC (3) 9.3 0.0093 P10.5 crx- retina GCCACCCTCT (3) 7.4 0.0074 P10.5 crx- retina ATCAAGGTGG (2) 5.6 0.0056 P10.5 crx- retina GTTACAACTG (3) 5.6 0.0056 P10.5 crx- retina GTGACAACTG (7) 3.7 0.0037 P10.5 crx- retina GTGCCGCGGG 3.7 0.0037 P10.5 crx- retina TTGCCTGCAT (2) 3.7 0.0037 P10.5 crx- retina TTGGCTGGAT (2) 1.9 0.0019 P10.5 crx- retina TTTTAAAAAT (4) 1.9 0.0019 P10.5 crx+ retina TATTGGCTCT 144.2 0.1442 P10.5 crx+ retina GTGACAACTG (7) 13.5 0.0135 P10.5 crx+ retina TATTGGCTCC (3) 7.7 0.0077 P10.5 crx+ retina GCCACCCTCT (3) 3.8 0.0038 P10.5 crx+ retina GTGCCGCGGG 3.8 0.0038 P10.5 crx+ retina GTGCCGGGGC (3) 3.8 0.0038 P10.5 crx+ retina TATTGGCTTT (2) 1.9 0.0019 P10.5 crx+ retina TTGCCTGCAT (2) 1.9 0.0019 P10.5 crx+ retina TTTTAAAAAT (4) 1.9 0.0019 Adult retinal TATTGGCTCT 72.2 0.0722 Adult retinal GTTACAACTG (3) 7.4 0.0074 Adult retinal GTGACAACTG (7) 3.7 0.0037 Adult retinal GTGGCATACA (4) 1.9 0.0019 Adult retinal TATGGCTCTG (5) 1.9 0.0019 Adult retinal TCTGTCCTGA (4) 1.9 0.0019 Adult retinal TTGGCTGGAT (2) 1.9 0.0019 ONL TATTGGCTCT 74.7 0.0747 ONL GTGACAACTG (7) 13.4 0.0134 ONL GTTACAACTG (3) 5.7 0.0057 ONL TTTTAAAAAT (4) 5.7 0.0057 ONL GTGGCATACA (4) 3.8 0.0038 ONL TATTGGCTCC (3) 3.8 0.0038 ONL GCCACCCTCT (3) 1.9 0.0019 ONL GTGAAAAGAA (3) 1.9 0.0019 ONL GTGCCGCGGG 1.9 0.0019