Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.148039	Ggps1	geranylgeranyl diphosphate synthase 1	13	13 8.0 cM	14593
Gene Ontology	geranyltranstransferase activity | isoprenoid biosynthesis | transferase activity
Human Homolog	GGPS1[geranylgeranyl diphosphate synthase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 111 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TGGGTGCTGG (64) 8.2 0.0082 P8 Cb GC GCAGTTCACA (4) 4.9 0.0049 P8 Cb GC TACTACTTGG 3.3 0.0033 P8 Cb GC AGTAATGCCA 1.6 0.0016 P8 Cb GC CCATTTGGTC 1.6 0.0016 P8 Cb GC TCCTATGCCC (3) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GCAGTTCACA (4) 11.6 0.0116 Cb medulloblastoma TGGGTGCTGG (64) 9.2 0.0092 Cb medulloblastoma AGTAGCTGAG (2) 2.3 0.0023 Cb medulloblastoma CCCATTTGGT (2) 2.3 0.0023 Cb medulloblastoma TACTACTTGG 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GCAGTTCACA (4) 8 0.008 P8 GC+1d culture TGGGTGCTGG (64) 5.7 0.0057 P8 GC+1d culture CCCATTTGGT (2) 2.3 0.0023 P8 GC+1d culture TACTACTTGG 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GCAGTTCACA (4) 4.7 0.0047 P8 GC+SHH+1d culture TACTACTTGG 3.5 0.0035 P8 GC+SHH+1d culture TGGGTGCTGG (64) 3.5 0.0035 P8 GC+SHH+1d culture CCCATTTGGT (2) 2.3 0.0023 P8 GC+SHH+1d culture TATGTCTGTG (9) 2.3 0.0023 P8 GC+SHH+1d culture AGTAATGCCA 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts TGGGTGCTGG (64) 17.5 0.0175 3T3 fibroblasts TATGTCTGTG (9) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GCAGTTCACA (4) 14.8 0.0148 E15 cortex TGGGTGCTGG (64) 14.8 0.0148 E15 cortex AGTAATGCCA 9.9 0.0099 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TGGGTGCTGG (64) 13.6 0.0136 P1 cortex GCAGTTCACA (4) 4.5 0.0045 P1 cortex TATGTCTGTG (9) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TGGGTGCTGG (64) 9.1 0.0091 Hypothalamus GCAGTTCACA (4) 5.4 0.0054 Hypothalamus GAGAAGACTA (2) 3.6 0.0036 Hypothalamus TACTACTTGG 3.6 0.0036 Hypothalamus TATGTCTGTG (9) 3.6 0.0036 Hypothalamus AGTAGCTGAG (2) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TGGGTGCTGG (64) 9.4 0.0094 E12.5 retina AGTAATGCCA 3.8 0.0038 E12.5 retina GCAGTTCACA (4) 3.8 0.0038 E12.5 retina CCTGGCAAAG (3) 1.9 0.0019 E12.5 retina GAGAAGACTA (2) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TGGGTGCTGG (64) 54.7 0.0547 E14.5 retina GCAGTTCACA (4) 5.5 0.0055 E14.5 retina AGTAGCTGAG (2) 3.6 0.0036 E14.5 retina TACTACTTGG 3.6 0.0036 E14.5 retina TATGTCTGTG (9) 3.6 0.0036 E14.5 retina AGTAATGCCA 1.8 0.0018 E14.5 retina CCATTTGGTC 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TGGGTGCTGG (64) 41.7 0.0417 E16.5 retina GCAGTTCACA (4) 5.4 0.0054 E16.5 retina CCATTTGGTC 1.8 0.0018 E16.5 retina TATGTCTGTG (9) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TGGGTGCTGG (64) 20 0.02 E18.5 retina GCAGTTCACA (4) 5.5 0.0055 E18.5 retina CCCATTTGGT (2) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TGGGTGCTGG (64) 11.8 0.0118 P0.5 retina GAGAAGACTA (2) 7.9 0.0079 P0.5 retina GCAGTTCACA (4) 7.9 0.0079 P0.5 retina AGTAGCTGAG (2) 2 0.002 P0.5 retina TACTACTTGG 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TGGGTGCTGG (64) 17.6 0.0176 P2.5 retina TACTACTTGG 5.3 0.0053 P2.5 retina CCCATTTGGT (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GCAGTTCACA (4) 9.9 0.0099 P4.5 retina TGGGTGCTGG (64) 9.9 0.0099 P4.5 retina TACTACTTGG 7.9 0.0079 P4.5 retina CCTGGCAAAG (3) 2 0.002 P4.5 retina GAGAAGACTA (2) 2 0.002 P4.5 retina TCCTATGCCC (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TGGGTGCTGG (64) 13.3 0.0133 P6.5 retina GCAGTTCACA (4) 6.7 0.0067 P6.5 retina TACTACTTGG 6.7 0.0067 P6.5 retina TATGTCTGTG (9) 3.3 0.0033 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TGGGTGCTGG (64) 20.4 0.0204 P10.5 crx- retina TACTACTTGG 11.1 0.0111 P10.5 crx- retina AGTAATGCCA 1.9 0.0019 P10.5 crx- retina AGTAGCTGAG (2) 1.9 0.0019 P10.5 crx- retina CCTGGCAAAG (3) 1.9 0.0019 P10.5 crx- retina GAGAAGACTA (2) 1.9 0.0019 P10.5 crx- retina TCCTATGCCC (3) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TGGGTGCTGG (64) 15.4 0.0154 P10.5 crx+ retina AGTAGCTGAG (2) 3.8 0.0038 P10.5 crx+ retina GCAGTTCACA (4) 3.8 0.0038 P10.5 crx+ retina TACTACTTGG 3.8 0.0038 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TGGGTGCTGG (64) 13 0.013 Adult retinal TACTACTTGG 7.4 0.0074 Adult retinal AGTAGCTGAG (2) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TGGGTGCTGG (64) 40.2 0.0402 ONL GCAGTTCACA (4) 5.7 0.0057 ONL TATGTCTGTG (9) 3.8 0.0038 ONL AGTAATGCCA 1.9 0.0019 ONL TACTACTTGG 1.9 0.0019