Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.150231	4930524J08Rik	RIKEN cDNA 4930524J08 gene	5		75129
Mm.150231	C230004L04	hypothetical protein C230004L04	5		330135
Mm.150231	Hnrpd	heterogeneous nuclear ribonucleoprotein D	5		11991
Gene Ontology	chromosome, telomeric region | DNA binding | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | ribonucleoprotein complex | RNA binding | telomerase-dependent telomere maintenance
Human Homolog	HNRPD[heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 118 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTAGTAGT (4) 45.7 0.0457 P8 Cb GC TCATAGAAAC (4) 17.9 0.0179 P8 Cb GC TCAAAGGAAC (6) 6.5 0.0065 P8 Cb GC TGTTTGTTCT (9) 4.9 0.0049 Cb medulloblastoma GAAACTGCTT (4) 13.9 0.0139 Cb medulloblastoma ATGTAGTAGT (4) 9.2 0.0092 Cb medulloblastoma TCATAGAAAC (4) 9.2 0.0092 Cb medulloblastoma AATCATCTTT (3) 2.3 0.0023 P8 GC+1d culture TCATAGAAAC (4) 27.4 0.0274 P8 GC+1d culture ATGTAGTAGT (4) 19.4 0.0194 P8 GC+1d culture TCAAAGGAAC (6) 14.8 0.0148 P8 GC+1d culture GAAACTGCTT (4) 2.3 0.0023 P8 GC+1d culture GCCTGCCCCG (5) 2.3 0.0023 P8 GC+1d culture GGTACTTTTA (4) 1.1 0.0011 P8 GC+1d culture TGTTTGTTCT (9) 1.1 0.0011 P8 GC+SHH+1d culture ATGTAGTAGT (4) 32.8 0.0328 P8 GC+SHH+1d culture TCATAGAAAC (4) 14.1 0.0141 P8 GC+SHH+1d culture TCAAAGGAAC (6) 11.7 0.0117 P8 GC+SHH+1d culture ATGTAATAGT (4) 2.3 0.0023 P8 GC+SHH+1d culture GAAACTGCTT (4) 2.3 0.0023 P8 GC+SHH+1d culture GGTACTTTTA (4) 2.3 0.0023 P8 GC+SHH+1d culture GTTAAAAATG (8) 1.2 0.0012 3T3 fibroblasts TCATAGAAAC (4) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts ATGTAGTAGT (4) 7 0.007 E15 cortex GCCTGCCCCG (5) 14.8 0.0148 E15 cortex ATGTAGTAGT (4) 9.9 0.0099 E15 cortex TCATAGAAAC (4) 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TCATAGAAAC (4) 13.6 0.0136 P1 cortex ATGTAGTAGT (4) 9.1 0.0091 P1 cortex TGTTTGTTCT (9) 4.5 0.0045 Hypothalamus ATGTAGTAGT (4) 10.9 0.0109 Hypothalamus TCATAGAAAC (4) 10.9 0.0109 Hypothalamus GAAACTGCTT (4) 5.4 0.0054 Hypothalamus TCAAAGGAAC (6) 3.6 0.0036 E12.5 retina ATGTAGTAGT (4) 54.4 0.0544 E12.5 retina TCATAGAAAC (4) 18.8 0.0188 E12.5 retina GAAACTGCTT (4) 5.6 0.0056 E12.5 retina TCAAAGGAAC (6) 3.8 0.0038 E12.5 retina AATCATCTTT (3) 1.9 0.0019 E12.5 retina GGTACTTTTA (4) 1.9 0.0019 E12.5 retina GTTAAAAATG (8) 1.9 0.0019 E14.5 retina ATGTAGTAGT (4) 38.3 0.0383 E14.5 retina TCATAGAAAC (4) 27.3 0.0273 E14.5 retina TGTTTGTTCT (9) 1.8 0.0018 E16.5 retina ATGTAGTAGT (4) 21.7 0.0217 E16.5 retina TCATAGAAAC (4) 19.9 0.0199 E16.5 retina TCAAAGGAAC (6) 16.3 0.0163 E16.5 retina AAAACAAAAG (14) 3.6 0.0036 E16.5 retina GAAACTGCTT (4) 1.8 0.0018 E16.5 retina GCCTGCCCCG (5) 1.8 0.0018 E16.5 retina GGTACTTTTA (4) 1.8 0.0018 E18.5 retina ATGTAGTAGT (4) 30.9 0.0309 E18.5 retina TGCACCACTG (8) 5.5 0.0055 E18.5 retina GAAACTGCTT (4) 3.6 0.0036 E18.5 retina ATGTAATAGT (4) 1.8 0.0018 E18.5 retina GCCTGCCCCG (5) 1.8 0.0018 E18.5 retina TCATAGAAAC (4) 1.8 0.0018 E18.5 retina TGTTTGTTCT (9) 1.8 0.0018 P0.5 retina ATGTAGTAGT (4) 41.2 0.0412 P0.5 retina TCATAGAAAC (4) 9.8 0.0098 P0.5 retina TCAAAGGAAC (6) 5.9 0.0059 P0.5 retina GGTACTTTTA (4) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina ATGTAATAGT (4) 2 0.002 P0.5 retina GAAACTGCTT (4) 2 0.002 P0.5 retina GCCTGCCCCG (5) 2 0.002 P2.5 retina ATGTAGTAGT (4) 47.5 0.0475 P2.5 retina TCATAGAAAC (4) 12.3 0.0123 P2.5 retina TCAAAGGAAC (6) 8.8 0.0088 P2.5 retina AATCATCTTT (3) 3.5 0.0035 P2.5 retina ATGTAATAGT (4) 1.8 0.0018 P2.5 retina GAAACTGCTT (4) 1.8 0.0018 P2.5 retina GCCTGCCCCG (5) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTTAAAAATG (8) 1.8 0.0018 P4.5 retina ATGTAGTAGT (4) 33.7 0.0337 P4.5 retina TCAAAGGAAC (6) 9.9 0.0099 P4.5 retina TCATAGAAAC (4) 5.9 0.0059 P4.5 retina TGTTTGTTCT (9) 4 0.004 P4.5 retina GAAACTGCTT (4) 2 0.002 P4.5 retina GCCTGCCCCG (5) 2 0.002 P4.5 retina GGTACTTTTA (4) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina ATGTAGTAGT (4) 30 0.03 P6.5 retina TCATAGAAAC (4) 11.7 0.0117 P6.5 retina TCAAAGGAAC (6) 10 0.01 P6.5 retina GCCTGCCCCG (5) 6.7 0.0067 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GAAACTGCTT (4) 1.7 0.0017 P6.5 retina TGTTTGTTCT (9) 1.7 0.0017 P10.5 crx- retina TCATAGAAAC (4) 26 0.026 P10.5 crx- retina ATGTAGTAGT (4) 11.1 0.0111 P10.5 crx- retina TCAAAGGAAC (6) 5.6 0.0056 P10.5 crx- retina AAAACAAAAG (14) 1.9 0.0019 P10.5 crx- retina GAAACTGCTT (4) 1.9 0.0019 P10.5 crx- retina TGTTTGTTCT (9) 1.9 0.0019 P10.5 crx+ retina ATGTAGTAGT (4) 17.3 0.0173 P10.5 crx+ retina TCATAGAAAC (4) 7.7 0.0077 P10.5 crx+ retina TCAAAGGAAC (6) 3.8 0.0038 P10.5 crx+ retina GAAACTGCTT (4) 1.9 0.0019 P10.5 crx+ retina GGTACTTTTA (4) 1.9 0.0019 P10.5 crx+ retina TGCACCACTG (8) 1.9 0.0019 P10.5 crx+ retina TGTTTGTTCT (9) 1.9 0.0019 Adult retinal ATGTAGTAGT (4) 5.6 0.0056 Adult retinal TCATAGAAAC (4) 5.6 0.0056 Adult retinal GAAACTGCTT (4) 3.7 0.0037 Adult retinal TGTTTGTTCT (9) 3.7 0.0037 Adult retinal GCCTGCCCCG (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TCAAAGGAAC (6) 1.9 0.0019 ONL GAAACTGCTT (4) 7.7 0.0077 ONL ATGTAGTAGT (4) 5.7 0.0057 ONL GCCTGCCCCG (5) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TCATAGAAAC (4) 3.8 0.0038 ONL AAAACAAAAG (14) 1.9 0.0019