Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.151960	5830487J09Rik	RIKEN cDNA 5830487J09 gene	5		76118
Mm.151960	Bcl7a	B-cell CLL/lymphoma 7A	5		77045
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Human Homolog	BCL7A[B-cell CLL/lymphoma 7A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 96 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GTGGCTTACA (19) 11.4 0.0114 P8 Cb GC ATCAGAACTT (3) 4.9 0.0049 P8 Cb GC AGGTATTTAA (2) 1.6 0.0016 P8 Cb GC CCCAGCATCC (6) 1.6 0.0016 P8 Cb GC GCAGTCACAG (6) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GTGGCTTACA (19) 23.1 0.0231 Cb medulloblastoma CAAAAATATC (3) 4.6 0.0046 Cb medulloblastoma GCAGTCACAG (6) 4.6 0.0046 Cb medulloblastoma ATCAGAACTT (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GTGGCTTACA (19) 30.8 0.0308 P8 GC+1d culture ACCTCTGAAC (3) 4.6 0.0046 P8 GC+1d culture ATCAGAACTT (3) 2.3 0.0023 P8 GC+1d culture CCCAGCATCC (6) 2.3 0.0023 P8 GC+1d culture GGGGCTATCG (4) 2.3 0.0023 P8 GC+1d culture GTAACCTGCT (2) 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GTGGCTTACA (19) 36.3 0.0363 P8 GC+SHH+1d culture ACCTCTGAAC (3) 1.2 0.0012 P8 GC+SHH+1d culture AGGTATTTAA (2) 1.2 0.0012 P8 GC+SHH+1d culture CCCAGCATCC (6) 1.2 0.0012 P8 GC+SHH+1d culture GCAGTCACAG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGGCTATCG (4) 1.2 0.0012 P8 GC+SHH+1d culture GTAACCTGCT (2) 1.2 0.0012 3T3 fibroblasts GTGGCTTACA (19) 35 0.035 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GGGGCTATCG (4) 7 0.007 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GTGGCTTACA (19) 19.8 0.0198 E15 cortex ACCTCTGAAC (3) 4.9 0.0049 E15 cortex ATCAGAACTT (3) 4.9 0.0049 E15 cortex CAAAAATATC (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GTGGCTTACA (19) 22.7 0.0227 P1 cortex AGGTATTTAA (2) 9.1 0.0091 P1 cortex ATCAGAACTT (3) 4.5 0.0045 P1 cortex GCAGTCACAG (6) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GTGGCTTACA (19) 23.5 0.0235 Hypothalamus GCAGTCACAG (6) 9.1 0.0091 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GTGGCTTACA (19) 43.2 0.0432 E12.5 retina GTAACCTGCT (2) 3.8 0.0038 E12.5 retina CAAAAATATC (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GTGGCTTACA (19) 51 0.051 E14.5 retina ATCAGAACTT (3) 1.8 0.0018 E14.5 retina GCAGTCACAG (6) 1.8 0.0018 E16.5 retina GTGGCTTACA (19) 50.7 0.0507 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina ATCAGAACTT (3) 1.8 0.0018 E16.5 retina CCCAGCATCC (6) 1.8 0.0018 E16.5 retina GCAGTCACAG (6) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GTGGCTTACA (19) 40 0.04 E18.5 retina ATGATAATAG (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GTGGCTTACA (19) 45.1 0.0451 P0.5 retina ACCTCTGAAC (3) 2 0.002 P0.5 retina AGGTATTTAA (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GTGGCTTACA (19) 21.1 0.0211 P2.5 retina ACCTCTGAAC (3) 1.8 0.0018 P2.5 retina AGGTATTTAA (2) 1.8 0.0018 P2.5 retina ATCAGAACTT (3) 1.8 0.0018 P2.5 retina ATGATAATAG (3) 1.8 0.0018 P2.5 retina CAAAAATATC (3) 1.8 0.0018 P2.5 retina CCCAGCATCC (6) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GTGGCTTACA (19) 25.8 0.0258 P4.5 retina ATCAGAACTT (3) 5.9 0.0059 P4.5 retina CCCAGCATCC (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GTGGCTTACA (19) 35 0.035 P6.5 retina GTAACCTGCT (2) 3.3 0.0033 P6.5 retina ATCAGAACTT (3) 1.7 0.0017 P6.5 retina CCCAGCATCC (6) 1.7 0.0017 P6.5 retina GCAGTCACAG (6) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GTGGCTTACA (19) 24.2 0.0242 P10.5 crx- retina CCCAGCATCC (6) 3.7 0.0037 P10.5 crx- retina GCAGTCACAG (6) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GTGGCTTACA (19) 32.7 0.0327 P10.5 crx+ retina CAAAAATATC (3) 1.9 0.0019 P10.5 crx+ retina CCCAGCATCC (6) 1.9 0.0019 P10.5 crx+ retina GCAGTCACAG (6) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTGGCTTACA (19) 18.5 0.0185 Adult retinal CCCAGCATCC (6) 3.7 0.0037 Adult retinal GCAGTCACAG (6) 3.7 0.0037 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GTGGCTTACA (19) 30.6 0.0306 ONL ATGATAATAG (3) 1.9 0.0019