Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.152120
9530020G05Rik
RIKEN cDNA 9530020G05 gene
6
101240
Human Homolog
HSPC049[HSPC049 protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 56 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
AAGCAGCAGC (
8
)
4.9
0.0049
P8 Cb GC
CAGCAGCACG
(
4
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
AAGCAGCAGC (
8
)
9.2
0.0092
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
AAGCAGCAGC (
8
)
10.3
0.0103
P8 GC+1d culture
CTCCAGAGCA
(
3
)
2.3
0.0023
P8 GC+1d culture
CAGCAGCACG
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
AAGCAGCAGC (
8
)
8.2
0.0082
P8 GC+SHH+1d culture
CTCCAGAGCA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GGTGTGGGGG (
9
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
AAGCAGCAGC (
8
)
14
0.014
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
AAGCAGCAGC (
8
)
29.7
0.0297
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
AAGCAGCAGC (
8
)
18.2
0.0182
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
AAGCAGCAGC (
8
)
5.4
0.0054
Hypothalamus
CAGCAGCACG
(
4
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
AAGCAGCAGC (
8
)
15
0.015
E12.5 retina
CTCCAGAGCA
(
3
)
5.6
0.0056
E12.5 retina
GGTGTGGGGG (
9
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
AAGCAGCAGC (
8
)
1.8
0.0018
E14.5 retina
CAGCAGCACG
(
4
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
AAGCAGCAGC (
8
)
12.7
0.0127
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
AAGCAGCAGC (
8
)
5.5
0.0055
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
AAGCAGCAGC (
8
)
11.8
0.0118
P0.5 retina
CTCCAGAGCA
(
3
)
3.9
0.0039
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
AAGCAGCAGC (
8
)
15.8
0.0158
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CTCCAGAGCA
(
3
)
2
0.002
P4.5 retina
GGTGTGGGGG (
9
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
AAGCAGCAGC (
8
)
5
0.005
P6.5 retina
CTCCAGAGCA
(
3
)
3.3
0.0033
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
AAGCAGCAGC (
8
)
20.4
0.0204
P10.5 crx- retina
CTCCAGAGCA
(
3
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
AAGCAGCAGC (
8
)
5.8
0.0058
P10.5 crx+ retina
CTCCAGAGCA
(
3
)
3.8
0.0038
P10.5 crx+ retina
GGTGTGGGGG (
9
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
AAGCAGCAGC (
8
)
7.4
0.0074
Adult retinal
CAGCAGCACG
(
4
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
AAGCAGCAGC (
8
)
1.9
0.0019
