Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.153372	Brap	BRCA1 associated protein	5		72399
Gene Ontology	cytoplasm | ligase activity | MAPKKK cascade | nuclear localization sequence binding | protein ubiquitination | RAS protein signal transduction | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	BRAP[BRCA1 associated protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 43 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCATTATTG (3) 13.1 0.0131 P8 Cb GC CTAATTAAGA 1.6 0.0016 Cb medulloblastoma TTCATTATTG (3) 13.9 0.0139 Cb medulloblastoma TTGGGATTTA (2) 2.3 0.0023 P8 GC+1d culture TTCATTATTG (3) 14.8 0.0148 P8 GC+1d culture TTGGGATTTA (2) 3.4 0.0034 P8 GC+SHH+1d culture TTCATTATTG (3) 10.5 0.0105 P8 GC+SHH+1d culture AAGGTCACAG (6) 1.2 0.0012 P8 GC+SHH+1d culture TCATAGAGAA 1.2 0.0012 3T3 fibroblasts AAGGTCACAG (6) 7 0.007 E15 cortex TTGGGATTTA (2) 4.9 0.0049 P1 cortex TTCATTATTG (3) 4.5 0.0045 Hypothalamus TTCATTATTG (3) 23.5 0.0235 Hypothalamus AAGGTCACAG (6) 3.6 0.0036 Hypothalamus TTGGGATTTA (2) 3.6 0.0036 Hypothalamus GCCCACTGCC (8) 1.8 0.0018 E12.5 retina TTCATTATTG (3) 30 0.03 E12.5 retina AAGGTCACAG (6) 1.9 0.0019 E14.5 retina TTCATTATTG (3) 14.6 0.0146 E14.5 retina GCCCACTGCC (8) 1.8 0.0018 E14.5 retina TCATAGAGAA 1.8 0.0018 E16.5 retina TTCATTATTG (3) 16.3 0.0163 E16.5 retina AAGGTCACAG (6) 1.8 0.0018 E16.5 retina TTGGGATTTA (2) 1.8 0.0018 E18.5 retina TTCATTATTG (3) 23.6 0.0236 E18.5 retina TTGGGATTTA (2) 3.6 0.0036 P0.5 retina TTCATTATTG (3) 3.9 0.0039 P0.5 retina CTAATTAAGA 2 0.002 P2.5 retina TTCATTATTG (3) 12.3 0.0123 P2.5 retina TCATAGAGAA 3.5 0.0035 P2.5 retina AAGGTCACAG (6) 1.8 0.0018 P2.5 retina CTAATTAAGA 1.8 0.0018 P2.5 retina TTGGGATTTA (2) 1.8 0.0018 P4.5 retina TTCATTATTG (3) 7.9 0.0079 P4.5 retina CTAATTAAGA 2 0.002 P6.5 retina TTCATTATTG (3) 5 0.005 P10.5 crx- retina TTCATTATTG (3) 14.9 0.0149 P10.5 crx- retina GCCCACTGCC (8) 3.7 0.0037 P10.5 crx+ retina TTCATTATTG (3) 5.8 0.0058 P10.5 crx+ retina AAGGTCACAG (6) 1.9 0.0019 Adult retinal TTCATTATTG (3) 5.6 0.0056 Adult retinal AAGGTCACAG (6) 1.9 0.0019 ONL TTCATTATTG (3) 3.8 0.0038