Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.154581	Aco2	aconitase 2, mitochondrial	10	10 13.0 cM	11429
Gene Ontology	aconitate hydratase activity | citrate metabolism | hydro-lyase activity | iron ion binding | lyase activity | metabolism | mitochondrion | mitochondrion | tricarboxylic acid cycle
Human Homolog	ACO2[aconitase 2, mitochondrial]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 154 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGACAAGCT (3) 44 0.044 P8 Cb GC CAACTGTATT (2) 9.8 0.0098 P8 Cb GC AAGCCATTTT (4) 8.2 0.0082 P8 Cb GC GCTTGCTGCC (8) 4.9 0.0049 P8 Cb GC ATGAGGGGAA (4) 1.6 0.0016 P8 Cb GC GGAGCTGAAG (5) 1.6 0.0016 P8 Cb GC GGGTGAGGGT (8) 1.6 0.0016 Cb medulloblastoma CAACTGTATT (2) 9.2 0.0092 Cb medulloblastoma AAGCCATTTT (4) 6.9 0.0069 Cb medulloblastoma GCCTGGGATC (9) 6.9 0.0069 Cb medulloblastoma GGGTGAGGGT (8) 4.6 0.0046 Cb medulloblastoma ATGAGGGGAA (4) 2.3 0.0023 Cb medulloblastoma GGAGCTGAAG (5) 2.3 0.0023 Cb medulloblastoma TAAAGTACTC 2.3 0.0023 P8 GC+1d culture TGGACAAGCT (3) 90.2 0.0902 P8 GC+1d culture CAACTGTATT (2) 16 0.016 P8 GC+1d culture GGGTGAGGGT (8) 14.8 0.0148 P8 GC+1d culture AAGCCATTTT (4) 6.8 0.0068 P8 GC+1d culture CAAGTGTATT 3.4 0.0034 P8 GC+1d culture GCTTGCTGCC (8) 2.3 0.0023 P8 GC+1d culture ATGAGGGGAA (4) 1.1 0.0011 P8 GC+1d culture CTCCAGGCTG (4) 1.1 0.0011 P8 GC+1d culture GATGGCACCA (4) 1.1 0.0011 P8 GC+1d culture GTGACCAGAC (2) 1.1 0.0011 P8 GC+SHH+1d culture TGGACAAGCT (3) 58.5 0.0585 P8 GC+SHH+1d culture CAACTGTATT (2) 10.5 0.0105 P8 GC+SHH+1d culture GGGTGAGGGT (8) 8.2 0.0082 P8 GC+SHH+1d culture AAGCCATTTT (4) 7 0.007 P8 GC+SHH+1d culture ATGAGGGGAA (4) 2.3 0.0023 P8 GC+SHH+1d culture CCAAAACAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture CTTTTTTAAA (9) 1.2 0.0012 P8 GC+SHH+1d culture GCTTGCTGCC (8) 1.2 0.0012 3T3 fibroblasts TGGACAAGCT (3) 7 0.007 3T3 fibroblasts AAGCCATTTT (4) 3.5 0.0035 3T3 fibroblasts GGGTGAGGGT (8) 3.5 0.0035 E15 cortex TGGACAAGCT (3) 49.5 0.0495 E15 cortex CCTGCAGTCC (2) 9.9 0.0099 E15 cortex ACAAGTGGGG (5) 4.9 0.0049 E15 cortex CTCCAGGCTG (4) 4.9 0.0049 E15 cortex GATGGCACCA (4) 4.9 0.0049 E15 cortex GCTTGCTGCC (8) 4.9 0.0049 P1 cortex TGGACAAGCT (3) 159.1 0.1591 P1 cortex CAACTGTATT (2) 13.6 0.0136 P1 cortex GGGTGAGGGT (8) 9.1 0.0091 P1 cortex ATGAGGGGAA (4) 4.5 0.0045 P1 cortex CCAAAACAAA (8) 4.5 0.0045 P1 cortex CTTTTTTAAA (9) 4.5 0.0045 P1 cortex GCTTGCTGCC (8) 4.5 0.0045 P1 cortex GTGACCAGAC (2) 4.5 0.0045 Hypothalamus TGGACAAGCT (3) 30.8 0.0308 Hypothalamus CAACTGTATT (2) 18.1 0.0181 Hypothalamus GGGTGAGGGT (8) 9.1 0.0091 Hypothalamus AAGCCATTTT (4) 1.8 0.0018 Hypothalamus ACAAGTGGGG (5) 1.8 0.0018 Hypothalamus ATGAGGGGAA (4) 1.8 0.0018 Hypothalamus CAGCACTGGA (4) 1.8 0.0018 Hypothalamus CTCCAGGCTG (4) 1.8 0.0018 Hypothalamus GAAACCAGAC (3) 1.8 0.0018 Hypothalamus GATGGCACCA (4) 1.8 0.0018 Hypothalamus GGAGCTGAAG (5) 1.8 0.0018 E12.5 retina TGGACAAGCT (3) 15 0.015 E12.5 retina CAACTGTATT (2) 9.4 0.0094 E12.5 retina GGGTGAGGGT (8) 9.4 0.0094 E12.5 retina AAGCCATTTT (4) 3.8 0.0038 E12.5 retina CTTTTTTAAA (9) 1.9 0.0019 E12.5 retina GAAACCAGAC (3) 1.9 0.0019 E14.5 retina TGGACAAGCT (3) 23.7 0.0237 E14.5 retina CAACTGTATT (2) 9.1 0.0091 E14.5 retina AAGCCATTTT (4) 5.5 0.0055 E14.5 retina CTTTTTTAAA (9) 3.6 0.0036 E14.5 retina GGCTGGGGAT (2) 3.6 0.0036 E14.5 retina GGGGGAAATA (5) 3.6 0.0036 E14.5 retina CCAAAACAAA (8) 1.8 0.0018 E14.5 retina CCTGCAGTCC (2) 1.8 0.0018 E14.5 retina GTGACCAGAC (2) 1.8 0.0018 E16.5 retina TGGACAAGCT (3) 27.2 0.0272 E16.5 retina GCTTGCTGCC (8) 5.4 0.0054 E16.5 retina CAACTGTATT (2) 3.6 0.0036 E16.5 retina AAGCCATTTT (4) 1.8 0.0018 E16.5 retina CAGCACTGGA (4) 1.8 0.0018 E16.5 retina CTCCAGGCTG (4) 1.8 0.0018 E16.5 retina GGGGGAAATA (5) 1.8 0.0018 E16.5 retina GGGTGAGGGT (8) 1.8 0.0018 E18.5 retina TGGACAAGCT (3) 25.5 0.0255 E18.5 retina CAACTGTATT (2) 7.3 0.0073 E18.5 retina AAGCCATTTT (4) 3.6 0.0036 E18.5 retina GGAGCTGAAG (5) 3.6 0.0036 E18.5 retina GGGTGAGGGT (8) 1.8 0.0018 E18.5 retina TAAAGTACTC 1.8 0.0018 P0.5 retina TGGACAAGCT (3) 31.4 0.0314 P0.5 retina CAACTGTATT (2) 15.7 0.0157 P0.5 retina GGGTGAGGGT (8) 9.8 0.0098 P0.5 retina AAGCCATTTT (4) 5.9 0.0059 P0.5 retina ATGAGGGGAA (4) 5.9 0.0059 P0.5 retina CTTTTTTAAA (9) 3.9 0.0039 P0.5 retina GCTTGCTGCC (8) 3.9 0.0039 P0.5 retina TAAAGTACTC 3.9 0.0039 P0.5 retina CCAAAACAAA (8) 2 0.002 P0.5 retina CCTGCAGTCC (2) 2 0.002 P2.5 retina TGGACAAGCT (3) 22.9 0.0229 P2.5 retina AAGCCATTTT (4) 8.8 0.0088 P2.5 retina GGGTGAGGGT (8) 8.8 0.0088 P2.5 retina CAACTGTATT (2) 5.3 0.0053 P2.5 retina ATGAGGGGAA (4) 3.5 0.0035 P2.5 retina ACAAGTGGGG (5) 1.8 0.0018 P2.5 retina CCAAAACAAA (8) 1.8 0.0018 P2.5 retina CCTGCAGTCC (2) 1.8 0.0018 P2.5 retina CTTTTTTAAA (9) 1.8 0.0018 P2.5 retina GAAACCAGAC (3) 1.8 0.0018 P2.5 retina GGGGGAAATA (5) 1.8 0.0018 P4.5 retina TGGACAAGCT (3) 17.8 0.0178 P4.5 retina CAACTGTATT (2) 9.9 0.0099 P4.5 retina AAGCCATTTT (4) 7.9 0.0079 P4.5 retina GGGTGAGGGT (8) 5.9 0.0059 P4.5 retina ATGAGGGGAA (4) 4 0.004 P4.5 retina CTTTTTTAAA (9) 2 0.002 P4.5 retina GAAACCAGAC (3) 2 0.002 P6.5 retina TGGACAAGCT (3) 30 0.03 P6.5 retina GGGTGAGGGT (8) 20 0.02 P6.5 retina CAACTGTATT (2) 10 0.01 P6.5 retina AAGCCATTTT (4) 1.7 0.0017 P6.5 retina ATGAGGGGAA (4) 1.7 0.0017 P6.5 retina CCTGCAGTCC (2) 1.7 0.0017 P6.5 retina CTTTTTTAAA (9) 1.7 0.0017 P6.5 retina GCTTGCTGCC (8) 1.7 0.0017 P6.5 retina TAAAGTACTC 1.7 0.0017 P10.5 crx- retina GGGTGAGGGT (8) 14.9 0.0149 P10.5 crx- retina CAACTGTATT (2) 7.4 0.0074 P10.5 crx- retina AAGCCATTTT (4) 5.6 0.0056 P10.5 crx- retina GCTTGCTGCC (8) 5.6 0.0056 P10.5 crx- retina GGAGCTGAAG (5) 3.7 0.0037 P10.5 crx- retina TGGACAAGCT (3) 3.7 0.0037 P10.5 crx- retina ATGAGGGGAA (4) 1.9 0.0019 P10.5 crx- retina CAGCACTGGA (4) 1.9 0.0019 P10.5 crx- retina CTTTTTTAAA (9) 1.9 0.0019 P10.5 crx+ retina TGGACAAGCT (3) 11.5 0.0115 P10.5 crx+ retina CAACTGTATT (2) 9.6 0.0096 P10.5 crx+ retina AAGCCATTTT (4) 5.8 0.0058 P10.5 crx+ retina CCTGCAGTCC (2) 3.8 0.0038 P10.5 crx+ retina GCTTGCTGCC (8) 3.8 0.0038 P10.5 crx+ retina GGAGCTGAAG (5) 3.8 0.0038 P10.5 crx+ retina CCAAAACAAA (8) 1.9 0.0019 P10.5 crx+ retina GGGTGAGGGT (8) 1.9 0.0019 Adult retinal ATGAGGGGAA (4) 7.4 0.0074 Adult retinal CAACTGTATT (2) 5.6 0.0056 Adult retinal GGGTGAGGGT (8) 3.7 0.0037 Adult retinal TGGACAAGCT (3) 3.7 0.0037 ONL CAACTGTATT (2) 15.3 0.0153 ONL ATGAGGGGAA (4) 3.8 0.0038 ONL AAGCCATTTT (4) 1.9 0.0019 ONL CTTTTTTAAA (9) 1.9 0.0019 ONL GGAGCTGAAG (5) 1.9 0.0019 ONL GGCTGGGGAT (2) 1.9 0.0019 ONL TGGACAAGCT (3) 1.9 0.0019