Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.159915
Wdr42a
WD repeat domain 42A
1
1 93.7 cM
98193
Mm.159915
AA433120
expressed sequence AA433120
1
98204
Mm.159915
8430437O03Rik
RIKEN cDNA 8430437O03 gene
1
71536
Mm.159915
B230205O20Rik
RIKEN cDNA B230205O20 gene
1
77413
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 99 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
CACTCTGGAA
(
5
)
1.6
0.0016
P8 Cb GC
TTCAGCTCGG
(
4
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
CACTCTGGAA
(
5
)
9.2
0.0092
Cb medulloblastoma
CCACTCTCTT
(
4
)
4.6
0.0046
Cb medulloblastoma
AAACAAAAAA (
12
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
CCTGCTGCTC (
14
)
4.6
0.0046
P8 GC+1d culture
CACTCTGGAA
(
5
)
2.3
0.0023
P8 GC+1d culture
ATTTGTTGGG (
5
)
1.1
0.0011
P8 GC+1d culture
CCGCTCTCTT
(
6
)
1.1
0.0011
P8 GC+1d culture
GTGTAGGGCT (
8
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
CCTGCTGCTC (
14
)
3.5
0.0035
P8 GC+SHH+1d culture
CACTCTGGAA
(
5
)
2.3
0.0023
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
CCGCTCTCTT
(
6
)
14
0.014
3T3 fibroblasts
GAACACCCCA (
9
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
ATTTGTTGGG (
5
)
4.9
0.0049
E15 cortex
CACTCTGGAA
(
5
)
4.9
0.0049
E15 cortex
CCACTCTCTT
(
4
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
GGCAAGCAAA (
7
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
CACTCTGGAA
(
5
)
5.4
0.0054
Hypothalamus
AAACAAAAAA (
12
)
1.8
0.0018
Hypothalamus
CCACTCTCTT
(
4
)
1.8
0.0018
Hypothalamus
CCCAGCCTTC
(
7
)
1.8
0.0018
Hypothalamus
GAACACCCCA (
9
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
CACTCTGGAA
(
5
)
11.3
0.0113
E12.5 retina
CCACTCTCTT
(
4
)
11.3
0.0113
E12.5 retina
ATTTGTTGGG (
5
)
9.4
0.0094
E12.5 retina
CCTGCTGCTC (
14
)
5.6
0.0056
E12.5 retina
TTCAGCTCGG
(
4
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
CACTCTGGAA
(
5
)
5.5
0.0055
E14.5 retina
GAACACCCCA (
9
)
3.6
0.0036
E14.5 retina
AAACAAAAAA (
12
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
CACTCTGGAA
(
5
)
7.2
0.0072
E16.5 retina
CCTGCTGCTC (
14
)
5.4
0.0054
E16.5 retina
ACTGAAGTGT
(
5
)
1.8
0.0018
E16.5 retina
ATTTGTTGGG (
5
)
1.8
0.0018
E16.5 retina
GTGTAGGGCT (
8
)
1.8
0.0018
E16.5 retina
TACAAAAGAT (
6
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
CACTCTGGAA
(
5
)
5.5
0.0055
E18.5 retina
AAACAAAAAA (
12
)
3.6
0.0036
E18.5 retina
TACAAAAGAT (
6
)
3.6
0.0036
E18.5 retina
ATTTGTTGGG (
5
)
1.8
0.0018
E18.5 retina
CCTGCTGCTC (
14
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
AATCATCTGA (
7
)
3.9
0.0039
P0.5 retina
ATTTGTTGGG (
5
)
2
0.002
P0.5 retina
CACTCTGGAA
(
5
)
2
0.002
P0.5 retina
CCACTCTCTT
(
4
)
2
0.002
P0.5 retina
CCCAGCCTTC
(
7
)
2
0.002
P0.5 retina
TACAAAAGAT (
6
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
CACTCTGGAA
(
5
)
7
0.007
P2.5 retina
CCACTCTCTT
(
4
)
5.3
0.0053
P2.5 retina
AAACAAAAAA (
12
)
1.8
0.0018
P2.5 retina
AATCATCTGA (
7
)
1.8
0.0018
P2.5 retina
ATTTGTTGGG (
5
)
1.8
0.0018
P2.5 retina
GAACACCCCA (
9
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
CACTCTGGAA
(
5
)
11.9
0.0119
P4.5 retina
CCTGCTGCTC (
14
)
4
0.004
P4.5 retina
AAACAAAAAA (
12
)
2
0.002
P4.5 retina
ATTTGTTGGG (
5
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
CACTCTGGAA
(
5
)
3.3
0.0033
P6.5 retina
CCTGCTGCTC (
14
)
1.7
0.0017
P6.5 retina
GAACACCCCA (
9
)
1.7
0.0017
P6.5 retina
GGCAAGCAAA (
7
)
1.7
0.0017
P6.5 retina
TACAAAAGAT (
6
)
1.7
0.0017
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
CACTCTGGAA
(
5
)
7.4
0.0074
P10.5 crx- retina
ACTGAAGTGT
(
5
)
1.9
0.0019
P10.5 crx- retina
CCTGCTGCTC (
14
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
CACTCTGGAA
(
5
)
11.5
0.0115
P10.5 crx+ retina
CCGCTCTCTT
(
6
)
5.8
0.0058
P10.5 crx+ retina
CCTGCTGCTC (
14
)
5.8
0.0058
P10.5 crx+ retina
ACTGAAGTGT
(
5
)
1.9
0.0019
P10.5 crx+ retina
ATTTGTTGGG (
5
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
CACTCTGGAA
(
5
)
3.7
0.0037
Adult retinal
CCTGCTGCTC (
14
)
3.7
0.0037
Adult retinal
ATTTGTTGGG (
5
)
1.9
0.0019
Adult retinal
GAACACCCCA (
9
)
1.9
0.0019
Adult retinal
GGCAAGCAAA (
7
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
CACTCTGGAA
(
5
)
3.8
0.0038
ONL
CCCAGCCTTC
(
7
)
3.8
0.0038
ONL
TACAAAAGAT (
6
)
1.9
0.0019
