Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.16660	P4hb	prolyl 4-hydroxylase, beta polypeptide	11	11 80.0 cM	18453
Gene Ontology	electron transport | electron transporter activity | endoplasmic reticulum | extracellular space | isomerase activity | peptidyl-proline hydroxylation to 4-hydroxy-L-proline | procollagen-proline 4-dioxygenase activity | procollagen-proline 4-dioxygenase activity | protein disulfide isomerase activity
Human Homolog	P4HB[procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 147 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTGTGGCC (2) 9.8 0.0098 P8 Cb GC TGGCCTGAGT 3.3 0.0033 P8 Cb GC CCCTGTGCCC (3) 1.6 0.0016 P8 Cb GC GAGGAGGAGG (35) 1.6 0.0016 P8 Cb GC GTGGAAAAAA (7) 1.6 0.0016 P8 Cb GC TGCTTGCTGC (2) 1.6 0.0016 P8 Cb GC TGTGAACACA (7) 1.6 0.0016 Cb medulloblastoma TGGCCTGAGT 30.1 0.0301 Cb medulloblastoma ATTTGGGAAA (6) 2.3 0.0023 Cb medulloblastoma CAAGCAAAAA (5) 2.3 0.0023 Cb medulloblastoma CTGGGCCGTG 2.3 0.0023 Cb medulloblastoma GCCTGTGGCC (2) 2.3 0.0023 P8 GC+1d culture GCCTGTGGCC (2) 19.4 0.0194 P8 GC+1d culture TGGCCTGAGT 11.4 0.0114 P8 GC+1d culture CTGGGCCGTG 3.4 0.0034 P8 GC+1d culture GTGTTGAAGA (8) 3.4 0.0034 P8 GC+1d culture GTGGAAAAAA (7) 2.3 0.0023 P8 GC+1d culture ATTTGGGAAA (6) 1.1 0.0011 P8 GC+1d culture GGAACACATC (3) 1.1 0.0011 P8 GC+1d culture GTCACTGACA (2) 1.1 0.0011 P8 GC+SHH+1d culture GCCTGTGGCC (2) 15.2 0.0152 P8 GC+SHH+1d culture TGGCCTGAGT 5.9 0.0059 P8 GC+SHH+1d culture GTGTTGAAGA (8) 4.7 0.0047 P8 GC+SHH+1d culture GAGGAAGACG (3) 2.3 0.0023 P8 GC+SHH+1d culture CTGGGCCGTG 1.2 0.0012 P8 GC+SHH+1d culture GAGGAAGAAG (9) 1.2 0.0012 P8 GC+SHH+1d culture GAGGAGGAGG (35) 1.2 0.0012 3T3 fibroblasts GCCTGTGGCC (2) 94.6 0.0946 3T3 fibroblasts CCCTGTGGCC (2) 24.5 0.0245 3T3 fibroblasts GTCACTGACA (2) 7 0.007 3T3 fibroblasts GAGGAAGACG (3) 3.5 0.0035 3T3 fibroblasts GAGGAGGAGG (35) 3.5 0.0035 3T3 fibroblasts GCTTAGTAGT 3.5 0.0035 3T3 fibroblasts GGGGGGTGGG (10) 3.5 0.0035 E15 cortex CCCTGTGGCC (2) 14.8 0.0148 E15 cortex TGGCCTGAGT 14.8 0.0148 E15 cortex GCCTGTGGCC (2) 9.9 0.0099 E15 cortex ATTTGGGAAA (6) 4.9 0.0049 E15 cortex CTGGAAAAAA (10) 4.9 0.0049 E15 cortex GAGGAAGAAG (9) 4.9 0.0049 E15 cortex GAGGAGGAGG (35) 4.9 0.0049 P1 cortex CTGGGCCGTG 13.6 0.0136 P1 cortex GAGGAGGAGG (35) 4.5 0.0045 P1 cortex GCCTGTGGCC (2) 4.5 0.0045 P1 cortex GGGGGGTGGG (10) 4.5 0.0045 P1 cortex GTGGAAAAAA (7) 4.5 0.0045 P1 cortex GTGTTGAAGA (8) 4.5 0.0045 P1 cortex TGCTTGCTGC (2) 4.5 0.0045 Hypothalamus CTGGGCCGTG 10.9 0.0109 Hypothalamus TGGCCTGAGT 9.1 0.0091 Hypothalamus GAGGAGGAGG (35) 7.2 0.0072 Hypothalamus GTGGAAAAAA (7) 3.6 0.0036 Hypothalamus GAGGAAGACG (3) 1.8 0.0018 E12.5 retina GCCTGTGGCC (2) 15 0.015 E12.5 retina TTGAAATGGC (2) 5.6 0.0056 E12.5 retina GTGTTGAAGA (8) 3.8 0.0038 E12.5 retina ATTTGGGAAA (6) 1.9 0.0019 E12.5 retina CCCTGTGGCC (2) 1.9 0.0019 E12.5 retina CTGGAAAAAA (10) 1.9 0.0019 E12.5 retina CTGGGCCGTG 1.9 0.0019 E12.5 retina GAGGAGGAGG (35) 1.9 0.0019 E12.5 retina GTCACTGACA (2) 1.9 0.0019 E12.5 retina TGGCCTGAGT 1.9 0.0019 E12.5 retina TGTGAACACA (7) 1.9 0.0019 E14.5 retina GCCTGTGGCC (2) 10.9 0.0109 E14.5 retina CTGGAAAAGA (2) 3.6 0.0036 E14.5 retina GTGGAAAAAA (7) 3.6 0.0036 E14.5 retina GGACAAATTC (4) 1.8 0.0018 E14.5 retina GTCACTGACA (2) 1.8 0.0018 E16.5 retina GCCTGTGGCC (2) 32.6 0.0326 E16.5 retina GTGGAAAAAA (7) 3.6 0.0036 E16.5 retina TGGCCTGAGT 3.6 0.0036 E16.5 retina CCCTGTGCCC (3) 1.8 0.0018 E16.5 retina CTGGGCCGTG 1.8 0.0018 E16.5 retina GAGGAAGAAG (9) 1.8 0.0018 E16.5 retina GTGTTGAAGA (8) 1.8 0.0018 E16.5 retina TTGAAATGGC (2) 1.8 0.0018 E18.5 retina GCCTGTGGCC (2) 14.6 0.0146 E18.5 retina TTGAAATGGC (2) 5.5 0.0055 E18.5 retina CTGGGCCGTG 3.6 0.0036 E18.5 retina GGACAAATTC (4) 3.6 0.0036 E18.5 retina TGGCCTGAGT 3.6 0.0036 E18.5 retina CAAGCAAAAA (5) 1.8 0.0018 E18.5 retina CTGGAAAAAA (10) 1.8 0.0018 E18.5 retina CTGGAAAAGA (2) 1.8 0.0018 E18.5 retina GTGGAAAAAA (7) 1.8 0.0018 E18.5 retina GTGTTGAAGA (8) 1.8 0.0018 E18.5 retina TGTGAACACA (7) 1.8 0.0018 P0.5 retina GCCTGTGGCC (2) 19.6 0.0196 P0.5 retina TGGCCTGAGT 9.8 0.0098 P0.5 retina GTGTTGAAGA (8) 7.9 0.0079 P0.5 retina CAAGCAAAAA (5) 2 0.002 P0.5 retina CCCTGTGGCC (2) 2 0.002 P0.5 retina CTGGAAAAAA (10) 2 0.002 P0.5 retina GCTTAGTAGT 2 0.002 P0.5 retina GTGGAAAAAA (7) 2 0.002 P2.5 retina GCCTGTGGCC (2) 17.6 0.0176 P2.5 retina TGGCCTGAGT 8.8 0.0088 P2.5 retina CTGGGCCGTG 3.5 0.0035 P2.5 retina TTGAAATGGC (2) 3.5 0.0035 P2.5 retina GAGGAAGACG (3) 1.8 0.0018 P2.5 retina GAGGAGGAGG (35) 1.8 0.0018 P2.5 retina GTGTTGAAGA (8) 1.8 0.0018 P4.5 retina TGGCCTGAGT 17.8 0.0178 P4.5 retina GCCTGTGGCC (2) 15.9 0.0159 P4.5 retina GTGGAAAAAA (7) 5.9 0.0059 P4.5 retina CTGGAAAAAA (10) 2 0.002 P4.5 retina GAGGAGGAGG (35) 2 0.002 P4.5 retina GTCACTGACA (2) 2 0.002 P4.5 retina GTGTTGAAGA (8) 2 0.002 P4.5 retina TGTGAACACA (7) 2 0.002 P6.5 retina GCCTGTGGCC (2) 13.3 0.0133 P6.5 retina GTGGAAAAAA (7) 8.3 0.0083 P6.5 retina GTGTTGAAGA (8) 8.3 0.0083 P6.5 retina CTGGGCCGTG 6.7 0.0067 P6.5 retina TGGCCTGAGT 6.7 0.0067 P6.5 retina CTGGAAAAGA (2) 3.3 0.0033 P6.5 retina GGGGGGTGGG (10) 1.7 0.0017 P10.5 crx- retina TGGCCTGAGT 11.1 0.0111 P10.5 crx- retina GCCTGTGGCC (2) 9.3 0.0093 P10.5 crx- retina GTGTTGAAGA (8) 3.7 0.0037 P10.5 crx- retina CCCTGTGCCC (3) 1.9 0.0019 P10.5 crx- retina GAGGAAGACG (3) 1.9 0.0019 P10.5 crx- retina GAGGAGGAGG (35) 1.9 0.0019 P10.5 crx- retina GCTTAGTAGT 1.9 0.0019 P10.5 crx- retina GGAACACATC (3) 1.9 0.0019 P10.5 crx+ retina GCCTGTGGCC (2) 23.1 0.0231 P10.5 crx+ retina TGGCCTGAGT 23.1 0.0231 P10.5 crx+ retina GTGTTGAAGA (8) 5.8 0.0058 P10.5 crx+ retina ATTTGGGAAA (6) 1.9 0.0019 P10.5 crx+ retina GTCACTGACA (2) 1.9 0.0019 P10.5 crx+ retina GTGGAAAAAA (7) 1.9 0.0019 Adult retinal TGGCCTGAGT 16.7 0.0167 Adult retinal GTGTTGAAGA (8) 5.6 0.0056 Adult retinal GAGGAGGAGG (35) 3.7 0.0037 Adult retinal CTGGGCCGTG 1.9 0.0019 Adult retinal GCCTGTGGCC (2) 1.9 0.0019 Adult retinal GTGGAAAAAA (7) 1.9 0.0019 ONL GTGTTGAAGA (8) 15.3 0.0153 ONL GCCTGTGGCC (2) 7.7 0.0077 ONL ATTTGGGAAA (6) 3.8 0.0038 ONL TGGCCTGAGT 3.8 0.0038 ONL CTGGAAAAAA (10) 1.9 0.0019 ONL GAGGAGGAGG (35) 1.9 0.0019 ONL GGAACACATC (3) 1.9 0.0019 ONL GGGGGGTGGG (10) 1.9 0.0019 ONL TGCTTGCTGC (2) 1.9 0.0019