Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.178947	Becn1	beclin 1 (coiled-coil, myosin-like BCL2-interacting protein)	11		56208
Gene Ontology	autophagy | autophagy | cytoplasmic vesicle | cytoskeleton | defense response | Golgi trans face | membrane | protein binding | response to pest/pathogen/parasite
Human Homolog	BECN1[beclin 1 (coiled-coil, myosin-like BCL2 interacting protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 42 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTTAATA (5) 3.3 0.0033 P8 Cb GC CATCCTTTCC (3) 1.6 0.0016 P8 Cb GC GCGTACTCTG (3) 1.6 0.0016 P8 Cb GC GTGAGTTCCA (7) 1.6 0.0016 P8 Cb GC TCGGGCCAGA (3) 1.6 0.0016 Cb medulloblastoma CATCCTTTCC (3) 2.3 0.0023 Cb medulloblastoma TCGGGCCAGA (3) 2.3 0.0023 P8 GC+1d culture CATCCTTTCC (3) 4.6 0.0046 P8 GC+1d culture GTGAGTTCCA (7) 1.1 0.0011 P8 GC+1d culture TCGGGCCAGA (3) 1.1 0.0011 P8 GC+SHH+1d culture CATCCTTTCC (3) 7 0.007 P8 GC+SHH+1d culture GTGAGTTCCA (7) 5.9 0.0059 3T3 fibroblasts CATCCTTTCC (3) 10.5 0.0105 3T3 fibroblasts GCGTACTCTG (3) 3.5 0.0035 3T3 fibroblasts TTGGGGCAGA (2) 3.5 0.0035 E15 cortex CATCCTTTCC (3) 4.9 0.0049 E15 cortex GCGTACTCTG (3) 4.9 0.0049 E15 cortex GTGAGTTCCA (7) 4.9 0.0049 E15 cortex TCGGGCCAGA (3) 4.9 0.0049 Hypothalamus CATCCTTTCC (3) 1.8 0.0018 E12.5 retina CATCCTTTCC (3) 7.5 0.0075 E12.5 retina GTGAGTTCCA (7) 5.6 0.0056 E14.5 retina GTGAGTTCCA (7) 3.6 0.0036 E14.5 retina CATCCTTTCC (3) 1.8 0.0018 E14.5 retina GCGTACTCTG (3) 1.8 0.0018 E16.5 retina CATCCTTTCC (3) 1.8 0.0018 E18.5 retina GTGAGTTCCA (7) 1.8 0.0018 E18.5 retina TTGGGGCAGA (2) 1.8 0.0018 P0.5 retina CATCCTTTCC (3) 13.7 0.0137 P0.5 retina GTGAGTTCCA (7) 2 0.002 P2.5 retina CATCCTTTCC (3) 7 0.007 P2.5 retina GTGAGTTCCA (7) 3.5 0.0035 P2.5 retina TGGTTTAATA (5) 1.8 0.0018 P4.5 retina GTGAGTTCCA (7) 4 0.004 P6.5 retina CATCCTTTCC (3) 5 0.005 P6.5 retina GTGAGTTCCA (7) 5 0.005 P6.5 retina TTGGGGCAGA (2) 3.3 0.0033 P10.5 crx- retina GTGAGTTCCA (7) 3.7 0.0037 P10.5 crx+ retina CATCCTTTCC (3) 7.7 0.0077 Adult retinal CATCCTTTCC (3) 5.6 0.0056 Adult retinal GCGTACTCTG (3) 1.9 0.0019 ONL GTGAGTTCCA (7) 1.9 0.0019