Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.184021	Ptprd	protein tyrosine phosphatase, receptor type, D	4	4 38.0 cM	19266
Gene Ontology	hydrolase activity | integral to membrane | plasma membrane | protein-tyrosine-phosphatase activity | receptor activity | transmembrane receptor protein tyrosine phosphatase signaling pathway
Human Homolog	PTPRD[protein tyrosine phosphatase, receptor type, D]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 124 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC GAAGGGTATT (5) 4.9 0.0049 P8 Cb GC GAGTCTCTTC 4.9 0.0049 P8 Cb GC AGTTTGGCTT 3.3 0.0033 P8 Cb GC GGCCTGAATT (3) 3.3 0.0033 P8 Cb GC GTGTTTGTGT (3) 1.6 0.0016 P8 Cb GC TTGTGTCAGC (2) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma GAAGGGTATT (5) 4.6 0.0046 Cb medulloblastoma GGCCTGAATT (3) 4.6 0.0046 Cb medulloblastoma GAGTCTCTTC 2.3 0.0023 Cb medulloblastoma TATATATACA (6) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture GAGTCTCTTC 2.3 0.0023 P8 GC+1d culture ACTTATTTTC (6) 1.1 0.0011 P8 GC+1d culture GAAGGGTATT (5) 1.1 0.0011 P8 GC+1d culture GGCCTGAATT (3) 1.1 0.0011 P8 GC+1d culture GTGTTTGTGT (3) 1.1 0.0011 P8 GC+1d culture TATATATACA (6) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture GGCCTGAATT (3) 5.9 0.0059 P8 GC+SHH+1d culture AGTTTGGCTT 2.3 0.0023 P8 GC+SHH+1d culture TTTTGTTTTG (11) 2.3 0.0023 P8 GC+SHH+1d culture ACTTATTTTC (6) 1.2 0.0012 P8 GC+SHH+1d culture GAGTCTCTTC 1.2 0.0012 P8 GC+SHH+1d culture TATATATACA (6) 1.2 0.0012 P8 GC+SHH+1d culture TGGGAAAGGT (3) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts ACTTATTTTC (6) 3.5 0.0035 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex GAAGGGTATT (5) 4.9 0.0049 E15 cortex GTGTTTGTGT (3) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GAGTCTCTTC 22.7 0.0227 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex GGCCTGAATT (3) 9.1 0.0091 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus GAAGGGTATT (5) 3.6 0.0036 Hypothalamus TGGGAAAGGT (3) 3.6 0.0036 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina GAGTCTCTTC 5.6 0.0056 E12.5 retina GAAGGGTATT (5) 1.9 0.0019 E12.5 retina GGCCTGAATT (3) 1.9 0.0019 E12.5 retina GTGTTTGTGT (3) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina GGCCTGAATT (3) 3.6 0.0036 E14.5 retina ACTTATTTTC (6) 1.8 0.0018 E14.5 retina AGTTTGGCTT 1.8 0.0018 E14.5 retina GAAGGGTATT (5) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina GAGTCTCTTC 5.4 0.0054 E16.5 retina GTGTTTGTGT (3) 5.4 0.0054 E16.5 retina GAAGGGTATT (5) 1.8 0.0018 E16.5 retina GGCCTGAATT (3) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina GAAGGGTATT (5) 7.3 0.0073 E18.5 retina AGTTTGGCTT 3.6 0.0036 E18.5 retina GAGTCTCTTC 3.6 0.0036 E18.5 retina TGGGAAAGGT (3) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina GTGTTTGTGT (3) 5.9 0.0059 P0.5 retina ACTTATTTTC (6) 2 0.002 P0.5 retina GAAGGGTATT (5) 2 0.002 P0.5 retina GGCCTGAATT (3) 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina GAGTCTCTTC 8.8 0.0088 P2.5 retina GAAGGGTATT (5) 5.3 0.0053 P2.5 retina GTGTTTGTGT (3) 5.3 0.0053 P2.5 retina GGCCTGAATT (3) 3.5 0.0035 P2.5 retina ACTTATTTTC (6) 1.8 0.0018 P2.5 retina TTGTGTCAGC (2) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina GGCCTGAATT (3) 9.9 0.0099 P4.5 retina GAAGGGTATT (5) 5.9 0.0059 P4.5 retina GAGTCTCTTC 4 0.004 P4.5 retina ACTTATTTTC (6) 2 0.002 P4.5 retina GTGTTTGTGT (3) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina GAGTCTCTTC 11.7 0.0117 P6.5 retina GAAGGGTATT (5) 3.3 0.0033 P6.5 retina GGCCTGAATT (3) 3.3 0.0033 P6.5 retina AGTTTGGCTT 1.7 0.0017 P6.5 retina TTGTGTCAGC (2) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina GAGTCTCTTC 7.4 0.0074 P10.5 crx- retina GAAGGGTATT (5) 3.7 0.0037 P10.5 crx- retina GGCCTGAATT (3) 3.7 0.0037 P10.5 crx- retina TTTTGTTTTG (11) 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina GAGTCTCTTC 7.7 0.0077 P10.5 crx+ retina GGCCTGAATT (3) 5.8 0.0058 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina AGTTTGGCTT 3.8 0.0038 P10.5 crx+ retina GAAGGGTATT (5) 3.8 0.0038 P10.5 crx+ retina TATATATACA (6) 1.9 0.0019 P10.5 crx+ retina TGGGAAAGGT (3) 1.9 0.0019 P10.5 crx+ retina TTGTGTCAGC (2) 1.9 0.0019 P10.5 crx+ retina TTTTGTTTTG (11) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal GGCCTGAATT (3) 5.6 0.0056 Adult retinal ACTTATTTTC (6) 3.7 0.0037 Adult retinal GTGTTTGTGT (3) 3.7 0.0037 Adult retinal TTTTGTTTTG (11) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL GTGTTTGTGT (3) 3.8 0.0038 ONL GAAGGGTATT (5) 1.9 0.0019 ONL GGCCTGAATT (3) 1.9 0.0019