Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.188851
Pdap1
PDGFA associated protein 1
5
231887
Human Homolog
PDAP1[PDGFA associated protein 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 81 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CTCCTCAAAT
(
6
)
24.5
0.0245
P8 Cb GC
AAGATGCATT
(
2
)
6.5
0.0065
P8 Cb GC
AAAGTGAAGA
(
4
)
1.6
0.0016
P8 Cb GC
GTAACCAGAG
(
2
)
1.6
0.0016
Cb medulloblastoma
CTCCTCAAAT
(
6
)
11.6
0.0116
P8 GC+1d culture
CTCCTCAAAT
(
6
)
14.8
0.0148
P8 GC+1d culture
GTAACCAGAG
(
2
)
3.4
0.0034
P8 GC+1d culture
GTAACCAAAA (
4
)
2.3
0.0023
P8 GC+1d culture
TCTCACCCAC
(
3
)
2.3
0.0023
P8 GC+1d culture
AAAGTGAAGA
(
4
)
1.1
0.0011
P8 GC+1d culture
AAGATGCATT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CTCCTCAAAT
(
6
)
26.9
0.0269
P8 GC+SHH+1d culture
GTAACCAGAG
(
2
)
4.7
0.0047
P8 GC+SHH+1d culture
GTAACCAAAA (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AGCAAAGATA
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TCTCACCCAC
(
3
)
1.2
0.0012
3T3 fibroblasts
CTCCTCAAAT
(
6
)
7
0.007
3T3 fibroblasts
AAGATGCATT
(
2
)
3.5
0.0035
3T3 fibroblasts
GTAACCAAAA (
4
)
3.5
0.0035
E15 cortex
CTCCTCAAAT
(
6
)
24.7
0.0247
P1 cortex
AGCAAAGATA
(
4
)
9.1
0.0091
P1 cortex
CTCCTCAAAT
(
6
)
9.1
0.0091
Hypothalamus
GTAACCAAAA (
4
)
5.4
0.0054
Hypothalamus
CTCCTCAAAT
(
6
)
3.6
0.0036
Hypothalamus
GTACACAGCT (
4
)
3.6
0.0036
Hypothalamus
GTAACCAGAG
(
2
)
1.8
0.0018
Hypothalamus
TCTCACCCAC
(
3
)
1.8
0.0018
E12.5 retina
CTCCTCAAAT
(
6
)
15
0.015
E12.5 retina
AAGATGCATT
(
2
)
11.3
0.0113
E12.5 retina
GTAACCAAAA (
4
)
3.8
0.0038
E12.5 retina
TCTCACCCAC
(
3
)
1.9
0.0019
E12.5 retina
TGGTAGTGGT
(
2
)
1.9
0.0019
E14.5 retina
CTCCTCAAAT
(
6
)
25.5
0.0255
E14.5 retina
AAGATGCATT
(
2
)
5.5
0.0055
E14.5 retina
GTAACCAGAG
(
2
)
3.6
0.0036
E14.5 retina
AAAGTGAAGA
(
4
)
1.8
0.0018
E14.5 retina
TCTCACCCAC
(
3
)
1.8
0.0018
E16.5 retina
CTCCTCAAAT
(
6
)
47.1
0.0471
E16.5 retina
AAGATGCATT
(
2
)
1.8
0.0018
E16.5 retina
AGCAAAGATA
(
4
)
1.8
0.0018
E16.5 retina
GTAACCAAAA (
4
)
1.8
0.0018
E16.5 retina
GTAACCAGAG
(
2
)
1.8
0.0018
E16.5 retina
TGGTAGTGGT
(
2
)
1.8
0.0018
E18.5 retina
CTCCTCAAAT
(
6
)
34.6
0.0346
E18.5 retina
GTAACCAGAG
(
2
)
5.5
0.0055
E18.5 retina
AAGATGCATT
(
2
)
3.6
0.0036
E18.5 retina
AAAGTGAAGA
(
4
)
1.8
0.0018
E18.5 retina
TGGTAGTGGT
(
2
)
1.8
0.0018
P0.5 retina
CTCCTCAAAT
(
6
)
21.6
0.0216
P0.5 retina
GTAACCAGAG
(
2
)
3.9
0.0039
P0.5 retina
AAGATGCATT
(
2
)
2
0.002
P0.5 retina
AGCAAAGATA
(
4
)
2
0.002
P0.5 retina
GTAACCAAAA (
4
)
2
0.002
P0.5 retina
TCTCACCCAC
(
3
)
2
0.002
P2.5 retina
CTCCTCAAAT
(
6
)
22.9
0.0229
P2.5 retina
AAGATGCATT
(
2
)
7
0.007
P2.5 retina
GTAACCAAAA (
4
)
3.5
0.0035
P2.5 retina
GTAACCAGAG
(
2
)
3.5
0.0035
P2.5 retina
AGCAAAGATA
(
4
)
1.8
0.0018
P2.5 retina
GTACACAGCT (
4
)
1.8
0.0018
P2.5 retina
TGGTAGTGGT
(
2
)
1.8
0.0018
P4.5 retina
CTCCTCAAAT
(
6
)
27.7
0.0277
P4.5 retina
AAGATGCATT
(
2
)
4
0.004
P4.5 retina
GTAACCAAAA (
4
)
2
0.002
P4.5 retina
GTAACCAGAG
(
2
)
2
0.002
P6.5 retina
CTCCTCAAAT
(
6
)
23.3
0.0233
P6.5 retina
AAGATGCATT
(
2
)
8.3
0.0083
P6.5 retina
GTACACAGCT (
4
)
1.7
0.0017
P10.5 crx- retina
CTCCTCAAAT
(
6
)
9.3
0.0093
P10.5 crx- retina
AAAGTGAAGA
(
4
)
1.9
0.0019
P10.5 crx- retina
AGCAAAGATA
(
4
)
1.9
0.0019
P10.5 crx+ retina
CTCCTCAAAT
(
6
)
9.6
0.0096
P10.5 crx+ retina
AGCAAAGATA
(
4
)
1.9
0.0019
P10.5 crx+ retina
GTAACCAGAG
(
2
)
1.9
0.0019
Adult retinal
CTCCTCAAAT
(
6
)
7.4
0.0074
Adult retinal
AAGATGCATT
(
2
)
3.7
0.0037
Adult retinal
GTAACCAGAG
(
2
)
3.7
0.0037
Adult retinal
GTACACAGCT (
4
)
1.9
0.0019
ONL
CTCCTCAAAT
(
6
)
5.7
0.0057
ONL
AAGATGCATT
(
2
)
3.8
0.0038
ONL
GTAACCAAAA (
4
)
3.8
0.0038
