Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.195310	Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	5	5 54.0 cM	50926
Gene Ontology	DNA binding | mRNA metabolism | nucleic acid binding | nucleus | ribonucleoprotein complex | RNA binding | viral nucleocapsid
Human Homolog	HNRPDL[heterogeneous nuclear ribonucleoprotein D-like]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 147 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGTATCTTT (3) 40.8 0.0408 P8 Cb GC TTAAACCTCA 32.6 0.0326 P8 Cb GC CCTTGGCCTC 8.2 0.0082 P8 Cb GC GTGGGTCAGT (5) 3.3 0.0033 P8 Cb GC TACACTACAA 1.6 0.0016 Cb medulloblastoma TTAAACCTCA 18.5 0.0185 Cb medulloblastoma GTGTATCTTT (3) 13.9 0.0139 Cb medulloblastoma ACACGTCTAT (2) 2.3 0.0023 Cb medulloblastoma CCTTGGCTTC (2) 2.3 0.0023 Cb medulloblastoma GGATACAAAA (2) 2.3 0.0023 P8 GC+1d culture GTGTATCTTT (3) 29.7 0.0297 P8 GC+1d culture TTAAACCTCA 21.7 0.0217 P8 GC+1d culture CCTTGGCCTC 6.8 0.0068 P8 GC+1d culture AAAGTGGACC (3) 1.1 0.0011 P8 GC+1d culture ACACAATTGT (2) 1.1 0.0011 P8 GC+1d culture CCTTGGCTTC (2) 1.1 0.0011 P8 GC+1d culture CTGAGAGCCA (10) 1.1 0.0011 P8 GC+1d culture GGATACAAAA (2) 1.1 0.0011 P8 GC+1d culture GTGGGTCAGT (5) 1.1 0.0011 P8 GC+1d culture TACACTACAA 1.1 0.0011 P8 GC+1d culture TACCAGCGTA (3) 1.1 0.0011 P8 GC+SHH+1d culture GTGTATCTTT (3) 34 0.034 P8 GC+SHH+1d culture TTAAACCTCA 23.4 0.0234 P8 GC+SHH+1d culture GTGGGTCAGT (5) 7 0.007 P8 GC+SHH+1d culture CCTTGGCCTC 4.7 0.0047 P8 GC+SHH+1d culture CCTTGGCTTC (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGAGAGCCA (10) 1.2 0.0012 P8 GC+SHH+1d culture GGGTATCTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTAACTTGAC (3) 1.2 0.0012 P8 GC+SHH+1d culture TACCAGCGTA (3) 1.2 0.0012 P8 GC+SHH+1d culture TTAAACCCCA (2) 1.2 0.0012 3T3 fibroblasts GTGTATCTTT (3) 10.5 0.0105 3T3 fibroblasts TTAAACCTCA 10.5 0.0105 3T3 fibroblasts CCTTGGCCTC 3.5 0.0035 3T3 fibroblasts CTGAGAGCCA (10) 3.5 0.0035 3T3 fibroblasts GTGGGTCAGT (5) 3.5 0.0035 E15 cortex CCTTGGCCTC 9.9 0.0099 E15 cortex CTGAGAGCCA (10) 4.9 0.0049 E15 cortex GTGTATCTTT (3) 4.9 0.0049 P1 cortex TTAAACCTCA 22.7 0.0227 P1 cortex GTGTATCTTT (3) 13.6 0.0136 P1 cortex CTGAGAGCCA (10) 4.5 0.0045 P1 cortex TACCAGCGTA (3) 4.5 0.0045 Hypothalamus TTAAACCTCA 30.8 0.0308 Hypothalamus GTGTATCTTT (3) 7.2 0.0072 Hypothalamus GGGGGGGGGA (14) 3.6 0.0036 Hypothalamus ACACGTCTAT (2) 1.8 0.0018 Hypothalamus GGATACAAAA (2) 1.8 0.0018 Hypothalamus GTGGGTCAGT (5) 1.8 0.0018 Hypothalamus TACACTACAA 1.8 0.0018 E12.5 retina GTGTATCTTT (3) 63.8 0.0638 E12.5 retina TTAAACCTCA 63.8 0.0638 E12.5 retina CCTTGGCCTC 7.5 0.0075 E12.5 retina CCTTGGCTTC (2) 3.8 0.0038 E12.5 retina GGGGGGGGGA (14) 3.8 0.0038 E12.5 retina GGGTATCTTT (2) 3.8 0.0038 E12.5 retina TACCAGCGTA (3) 3.8 0.0038 E12.5 retina AAAGTGGACC (3) 1.9 0.0019 E12.5 retina GGATACAAAA (2) 1.9 0.0019 E12.5 retina GTAACTTGAC (3) 1.9 0.0019 E12.5 retina TTTAGAGTAC 1.9 0.0019 E14.5 retina TTAAACCTCA 78.3 0.0783 E14.5 retina GTGTATCTTT (3) 38.3 0.0383 E14.5 retina AAAGTGGACC (3) 1.8 0.0018 E14.5 retina CCTTGGCCTC 1.8 0.0018 E14.5 retina TGACTTTCCA (2) 1.8 0.0018 E16.5 retina GTGTATCTTT (3) 43.5 0.0435 E16.5 retina TTAAACCTCA 34.4 0.0344 E16.5 retina ACACAATTGT (2) 10.9 0.0109 E16.5 retina CCTTGGCCTC 3.6 0.0036 E16.5 retina CTGAGAGCCA (10) 1.8 0.0018 E16.5 retina GTAACTTGAC (3) 1.8 0.0018 E16.5 retina TACCAGCGTA (3) 1.8 0.0018 E16.5 retina TTTAGAGTAC 1.8 0.0018 E18.5 retina GTGTATCTTT (3) 61.8 0.0618 E18.5 retina TTAAACCTCA 56.4 0.0564 E18.5 retina CCTTGGCCTC 3.6 0.0036 E18.5 retina GGATACAAAA (2) 1.8 0.0018 E18.5 retina GGGGGGGGGA (14) 1.8 0.0018 E18.5 retina GTGGGTCAGT (5) 1.8 0.0018 E18.5 retina TGACTTTCCA (2) 1.8 0.0018 P0.5 retina TTAAACCTCA 70.7 0.0707 P0.5 retina GTGTATCTTT (3) 45.1 0.0451 P0.5 retina CCTTGGCCTC 7.9 0.0079 P0.5 retina CTGAGAGCCA (10) 3.9 0.0039 P0.5 retina CCTTGGCTTC (2) 2 0.002 P0.5 retina GTAACTTGAC (3) 2 0.002 P0.5 retina TACACTACAA 2 0.002 P0.5 retina TTAAACCCCA (2) 2 0.002 P0.5 retina TTCATCAGCA (11) 2 0.002 P0.5 retina TTTAGAGTAC 2 0.002 P2.5 retina TTAAACCTCA 77.4 0.0774 P2.5 retina GTGTATCTTT (3) 70.4 0.0704 P2.5 retina CCTTGGCCTC 14.1 0.0141 P2.5 retina CTGAGAGCCA (10) 5.3 0.0053 P2.5 retina GGATACAAAA (2) 5.3 0.0053 P2.5 retina ACACGTCTAT (2) 1.8 0.0018 P2.5 retina CCTTGGCTTC (2) 1.8 0.0018 P2.5 retina TACACTACAA 1.8 0.0018 P2.5 retina TACCAGCGTA (3) 1.8 0.0018 P2.5 retina TTAAACCCCA (2) 1.8 0.0018 P4.5 retina TTAAACCTCA 55.5 0.0555 P4.5 retina GTGTATCTTT (3) 37.6 0.0376 P4.5 retina CCTTGGCTTC (2) 2 0.002 P4.5 retina GGATACAAAA (2) 2 0.002 P4.5 retina GGGGGGGGGA (14) 2 0.002 P4.5 retina GTAACTTGAC (3) 2 0.002 P4.5 retina GTGGGTCAGT (5) 2 0.002 P4.5 retina TACACTACAA 2 0.002 P4.5 retina TACCAGCGTA (3) 2 0.002 P6.5 retina GTGTATCTTT (3) 50 0.05 P6.5 retina TTAAACCTCA 33.3 0.0333 P6.5 retina CCTTGGCCTC 3.3 0.0033 P6.5 retina CTGAGAGCCA (10) 3.3 0.0033 P6.5 retina GTAACTTGAC (3) 3.3 0.0033 P6.5 retina AAAGTGGACC (3) 1.7 0.0017 P6.5 retina TACCAGCGTA (3) 1.7 0.0017 P6.5 retina TTCATCAGCA (11) 1.7 0.0017 P10.5 crx- retina TTAAACCTCA 16.7 0.0167 P10.5 crx- retina GTGTATCTTT (3) 14.9 0.0149 P10.5 crx- retina CCTTGGCCTC 7.4 0.0074 P10.5 crx- retina GTGGGTCAGT (5) 7.4 0.0074 P10.5 crx- retina CTGAGAGCCA (10) 1.9 0.0019 P10.5 crx- retina GGGGGGGGGA (14) 1.9 0.0019 P10.5 crx- retina TTAAACCCCA (2) 1.9 0.0019 P10.5 crx+ retina GTGTATCTTT (3) 32.7 0.0327 P10.5 crx+ retina TTAAACCTCA 17.3 0.0173 P10.5 crx+ retina CCTTGGCCTC 9.6 0.0096 P10.5 crx+ retina AAAGTGGACC (3) 3.8 0.0038 P10.5 crx+ retina CTGAGAGCCA (10) 1.9 0.0019 P10.5 crx+ retina GGATACAAAA (2) 1.9 0.0019 P10.5 crx+ retina GTAACTTGAC (3) 1.9 0.0019 P10.5 crx+ retina GTGGGTCAGT (5) 1.9 0.0019 P10.5 crx+ retina TACACTACAA 1.9 0.0019 Adult retinal GTGTATCTTT (3) 14.8 0.0148 Adult retinal TTAAACCTCA 13 0.013 Adult retinal CCTTGGCCTC 11.1 0.0111 Adult retinal AAAGTGGACC (3) 1.9 0.0019 Adult retinal CTGAGAGCCA (10) 1.9 0.0019 Adult retinal TACCAGCGTA (3) 1.9 0.0019 Adult retinal TGACTTTCCA (2) 1.9 0.0019 Adult retinal TTCATCAGCA (11) 1.9 0.0019 ONL GTGTATCTTT (3) 15.3 0.0153 ONL TTAAACCTCA 7.7 0.0077 ONL CCTTGGCCTC 3.8 0.0038 ONL TACACTACAA 1.9 0.0019 ONL TACCAGCGTA (3) 1.9 0.0019