Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.195635	Ssbp3	single-stranded DNA binding protein 3	4		72475
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | single-stranded DNA binding | transcription regulator activity
Human Homolog	SSBP3[single stranded DNA binding protein 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 164 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGTTCACA (32) 14.7 0.0147 P8 Cb GC ACACTTTTTG (3) 6.5 0.0065 P8 Cb GC ACACTTGTTG (4) 3.3 0.0033 P8 Cb GC CATTGGATAC (2) 3.3 0.0033 P8 Cb GC AATGGATCCC 1.6 0.0016 P8 Cb GC ACACTTTTGT (3) 1.6 0.0016 P8 Cb GC GGGCCTGGCC (5) 1.6 0.0016 Cb medulloblastoma GTGGTTCACA (32) 11.6 0.0116 Cb medulloblastoma ACACTTTTTG (3) 9.2 0.0092 Cb medulloblastoma AATGGATCCC 4.6 0.0046 Cb medulloblastoma CATTGGATAC (2) 4.6 0.0046 Cb medulloblastoma ACACTTGTTG (4) 2.3 0.0023 P8 GC+1d culture GTGGTTCACA (32) 18.3 0.0183 P8 GC+1d culture TTCTACTGCC (2) 10.3 0.0103 P8 GC+1d culture ACACTTTTTG (3) 8 0.008 P8 GC+1d culture CATTGGATAC (2) 5.7 0.0057 P8 GC+1d culture ACACTTTTGT (3) 3.4 0.0034 P8 GC+1d culture ACACTTGTTG (4) 2.3 0.0023 P8 GC+1d culture TACAATGAAC (3) 2.3 0.0023 P8 GC+1d culture TACATTGAAG 2.3 0.0023 P8 GC+1d culture TATATCATAT 2.3 0.0023 P8 GC+1d culture CAATAAAAAG (6) 1.1 0.0011 P8 GC+1d culture GGCCTTGGGG (6) 1.1 0.0011 P8 GC+1d culture GGGGCCCCTT (6) 1.1 0.0011 P8 GC+1d culture TGGTTGCTAG (11) 1.1 0.0011 P8 GC+SHH+1d culture GTGGTTCACA (32) 31.6 0.0316 P8 GC+SHH+1d culture ACACTTTTTG (3) 5.9 0.0059 P8 GC+SHH+1d culture CATTGGATAC (2) 5.9 0.0059 P8 GC+SHH+1d culture TTCTACTGCC (2) 4.7 0.0047 P8 GC+SHH+1d culture TATATCATAT 2.3 0.0023 P8 GC+SHH+1d culture AATGGATCCC 1.2 0.0012 P8 GC+SHH+1d culture ACACTTGTTG (4) 1.2 0.0012 P8 GC+SHH+1d culture ACACTTTTGT (3) 1.2 0.0012 P8 GC+SHH+1d culture CAATAAAAAG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGCCTTGGGG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGCCTGGCC (5) 1.2 0.0012 P8 GC+SHH+1d culture TACAATGAAC (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGTTGCTAG (11) 1.2 0.0012 3T3 fibroblasts GTGGTTCACA (32) 17.5 0.0175 3T3 fibroblasts TGGTTGCTAG (11) 14 0.014 3T3 fibroblasts TTCTACTGCC (2) 7 0.007 3T3 fibroblasts ACACTTTTGT (3) 3.5 0.0035 3T3 fibroblasts CACACACATC (12) 3.5 0.0035 3T3 fibroblasts GGCCTTGGGG (6) 3.5 0.0035 E15 cortex GGCCTTGGGG (6) 14.8 0.0148 E15 cortex ACACTTTTTG (3) 4.9 0.0049 E15 cortex GTGGTTCACA (32) 4.9 0.0049 E15 cortex TTCTACTGCC (2) 4.9 0.0049 P1 cortex ACACTTGTTG (4) 27.3 0.0273 P1 cortex GTGGTTCACA (32) 27.3 0.0273 P1 cortex ACACTTTTTG (3) 9.1 0.0091 P1 cortex TATATCATAT 9.1 0.0091 P1 cortex ACACTTTTGT (3) 4.5 0.0045 P1 cortex TACAATGAAC (3) 4.5 0.0045 P1 cortex TGGTTGCTAG (11) 4.5 0.0045 Hypothalamus ACACTTGTTG (4) 25.4 0.0254 Hypothalamus GTGGTTCACA (32) 12.7 0.0127 Hypothalamus CATTGGATAC (2) 5.4 0.0054 Hypothalamus TATATCATAT 3.6 0.0036 Hypothalamus TGGTTGCTAG (11) 3.6 0.0036 Hypothalamus ACACTTTTGT (3) 1.8 0.0018 Hypothalamus ACACTTTTTG (3) 1.8 0.0018 Hypothalamus CAATAAAAAG (6) 1.8 0.0018 Hypothalamus TTCTACTGCC (2) 1.8 0.0018 E12.5 retina GTGGTTCACA (32) 28.2 0.0282 E12.5 retina CATTGGATAC (2) 11.3 0.0113 E12.5 retina AATGGATCCC 3.8 0.0038 E12.5 retina ACACTTGTTG (4) 3.8 0.0038 E12.5 retina ACACTTTTTG (3) 3.8 0.0038 E12.5 retina TGGTTGCTAG (11) 3.8 0.0038 E12.5 retina AAGGACAAAA (3) 1.9 0.0019 E12.5 retina GGGGCCCCTT (6) 1.9 0.0019 E12.5 retina TACAATGAAC (3) 1.9 0.0019 E14.5 retina GTGGTTCACA (32) 51 0.051 E14.5 retina TGGTTGCTAG (11) 21.9 0.0219 E14.5 retina CATTGGATAC (2) 5.5 0.0055 E14.5 retina GGCCTTGGGG (6) 5.5 0.0055 E14.5 retina ACACTTGTTG (4) 3.6 0.0036 E14.5 retina TATATCATAT 1.8 0.0018 E16.5 retina GTGGTTCACA (32) 39.8 0.0398 E16.5 retina TGGTTGCTAG (11) 19.9 0.0199 E16.5 retina ACACTTGTTG (4) 14.5 0.0145 E16.5 retina CATTGGATAC (2) 7.2 0.0072 E16.5 retina AAGGACAAAA (3) 3.6 0.0036 E16.5 retina ACACTTTTTG (3) 3.6 0.0036 E16.5 retina GGCCTTGGGG (6) 3.6 0.0036 E16.5 retina TATATCATAT 3.6 0.0036 E16.5 retina CAATAAAAAG (6) 1.8 0.0018 E16.5 retina TACATTGAAG 1.8 0.0018 E18.5 retina GTGGTTCACA (32) 40 0.04 E18.5 retina CATTGGATAC (2) 18.2 0.0182 E18.5 retina CAATAAAAAG (6) 5.5 0.0055 E18.5 retina GGTCAGAAAG (3) 5.5 0.0055 E18.5 retina TGGTTGCTAG (11) 5.5 0.0055 E18.5 retina ACACTTTTTG (3) 3.6 0.0036 E18.5 retina TTCTACTGCC (2) 3.6 0.0036 E18.5 retina ACACTTGTTG (4) 1.8 0.0018 E18.5 retina TACATTGAAG 1.8 0.0018 P0.5 retina GTGGTTCACA (32) 35.3 0.0353 P0.5 retina CATTGGATAC (2) 7.9 0.0079 P0.5 retina ACACTTGTTG (4) 3.9 0.0039 P0.5 retina ACACTTTTTG (3) 3.9 0.0039 P0.5 retina GGCCTTGGGG (6) 3.9 0.0039 P0.5 retina ACACTTTTGT (3) 2 0.002 P0.5 retina GGTCAGAAAG (3) 2 0.002 P0.5 retina TACATTGAAG 2 0.002 P0.5 retina TATATCATAT 2 0.002 P0.5 retina TGGTTGCTAG (11) 2 0.002 P0.5 retina TTCTACTGCC (2) 2 0.002 P2.5 retina GTGGTTCACA (32) 12.3 0.0123 P2.5 retina CATTGGATAC (2) 10.6 0.0106 P2.5 retina GGCCTTGGGG (6) 7 0.007 P2.5 retina ACACTTGTTG (4) 5.3 0.0053 P2.5 retina ACACTTTTTG (3) 5.3 0.0053 P2.5 retina TATATCATAT 5.3 0.0053 P2.5 retina CAATAAAAAG (6) 3.5 0.0035 P2.5 retina TACATTGAAG 3.5 0.0035 P2.5 retina GGGCCTGGCC (5) 1.8 0.0018 P4.5 retina GTGGTTCACA (32) 33.7 0.0337 P4.5 retina CATTGGATAC (2) 13.9 0.0139 P4.5 retina ACACTTGTTG (4) 5.9 0.0059 P4.5 retina ACACTTTTTG (3) 5.9 0.0059 P4.5 retina GGTCAGAAAG (3) 4 0.004 P4.5 retina GGCCTTGGGG (6) 2 0.002 P4.5 retina TATATCATAT 2 0.002 P4.5 retina TGGTTGCTAG (11) 2 0.002 P4.5 retina TTCTACTGCC (2) 2 0.002 P6.5 retina GTGGTTCACA (32) 25 0.025 P6.5 retina CATTGGATAC (2) 8.3 0.0083 P6.5 retina TGGTTGCTAG (11) 6.7 0.0067 P6.5 retina ACACTTGTTG (4) 3.3 0.0033 P6.5 retina ACACTTTTGT (3) 3.3 0.0033 P6.5 retina CAATAAAAAG (6) 1.7 0.0017 P6.5 retina GGCCTTGGGG (6) 1.7 0.0017 P6.5 retina TACATTGAAG 1.7 0.0017 P10.5 crx- retina ACACTTGTTG (4) 46.4 0.0464 P10.5 crx- retina GTGGTTCACA (32) 20.4 0.0204 P10.5 crx- retina TGGTTGCTAG (11) 7.4 0.0074 P10.5 crx- retina CATTGGATAC (2) 5.6 0.0056 P10.5 crx- retina ACACTTTTGT (3) 3.7 0.0037 P10.5 crx- retina ACACTTTTTG (3) 3.7 0.0037 P10.5 crx- retina AAGGACAAAA (3) 1.9 0.0019 P10.5 crx- retina TACAATGAAC (3) 1.9 0.0019 P10.5 crx- retina TATATCATAT 1.9 0.0019 P10.5 crx- retina TTCTACTGCC (2) 1.9 0.0019 P10.5 crx+ retina GTGGTTCACA (32) 32.7 0.0327 P10.5 crx+ retina ACACTTGTTG (4) 17.3 0.0173 P10.5 crx+ retina CATTGGATAC (2) 13.5 0.0135 P10.5 crx+ retina ACACTTTTTG (3) 9.6 0.0096 P10.5 crx+ retina CACACACATC (12) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTAG (11) 1.9 0.0019 Adult retinal GTGGTTCACA (32) 33.3 0.0333 Adult retinal ACACTTGTTG (4) 7.4 0.0074 Adult retinal TTCTACTGCC (2) 7.4 0.0074 Adult retinal CATTGGATAC (2) 5.6 0.0056 Adult retinal TGGTTGCTAG (11) 5.6 0.0056 Adult retinal GGGGCCCCTT (6) 1.9 0.0019 ONL GTGGTTCACA (32) 32.6 0.0326 ONL TGGTTGCTAG (11) 9.6 0.0096 ONL CATTGGATAC (2) 3.8 0.0038 ONL ACACTTGTTG (4) 1.9 0.0019 ONL CACACACATC (12) 1.9 0.0019 ONL TATATCATAT 1.9 0.0019 ONL TTCTACTGCC (2) 1.9 0.0019