Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.196564	D8Ertd158e	DNA segment, Chr 8, ERATO Doi 158, expressed	8	8 53.0 cM	52186
Mm.196564	Atbf1	AT motif binding factor 1	8		11906
Gene Ontology	DNA binding | mitochondrion | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | zinc ion binding
Human Homolog	ATBF1[AT-binding transcription factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 65 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC CTTTAAAAAA (15) 3.3 0.0033 P8 Cb GC ATTCAACACA (9) 1.6 0.0016 P8 Cb GC GAGACTAACA (2) 1.6 0.0016 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma CTTTAAAAAA (15) 9.2 0.0092 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture CTTTAAAAAA (15) 2.3 0.0023 P8 GC+1d culture ATTCAACACA (9) 1.1 0.0011 P8 GC+1d culture GTACAAAAAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture CACTGTATGG (4) 2.3 0.0023 P8 GC+SHH+1d culture ATTCAACACA (9) 1.2 0.0012 P8 GC+SHH+1d culture CTTTAAAAAA (15) 1.2 0.0012 P8 GC+SHH+1d culture GTACAAAAAA (4) 1.2 0.0012 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex CTTTAAAAAA (15) 4.5 0.0045 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus CTTTAAAAAA (15) 5.4 0.0054 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina ATTCAACACA (9) 1.9 0.0019 E12.5 retina CTTTAAAAAA (15) 1.9 0.0019 E12.5 retina GAGACTAACA (2) 1.9 0.0019 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina GAGACTAACA (2) 1.8 0.0018 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina CTTTAAAAAA (15) 3.6 0.0036 E16.5 retina GAGACTAACA (2) 3.6 0.0036 E16.5 retina ATTCAACACA (9) 1.8 0.0018 E16.5 retina CACTGTATGG (4) 1.8 0.0018 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina CTTTAAAAAA (15) 27.3 0.0273 E18.5 retina CACTGTATGG (4) 3.6 0.0036 E18.5 retina TATTTTGGTA (2) 1.8 0.0018 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina ATTCAACACA (9) 2 0.002 P0.5 retina CTTTAAAAAA (15) 2 0.002 P0.5 retina GTACAAAAAA (4) 2 0.002 P0.5 retina TATTTTGGTA (2) 2 0.002 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina CTTTAAAAAA (15) 10.6 0.0106 P2.5 retina ATTCAACACA (9) 3.5 0.0035 P2.5 retina CACTGTATGG (4) 1.8 0.0018 P2.5 retina GAGACTAACA (2) 1.8 0.0018 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina CTTTAAAAAA (15) 17.8 0.0178 P4.5 retina CACTGTATGG (4) 5.9 0.0059 P4.5 retina ATTCAACACA (9) 4 0.004 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina CTTTAAAAAA (15) 13.3 0.0133 P6.5 retina CACTGTATGG (4) 3.3 0.0033 P6.5 retina GAGACTAACA (2) 1.7 0.0017 P6.5 retina GTACAAAAAA (4) 1.7 0.0017 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina CACTGTATGG (4) 1.9 0.0019 P10.5 crx- retina CTTTAAAAAA (15) 1.9 0.0019 P10.5 crx- retina GAGACTAACA (2) 1.9 0.0019 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina CTTTAAAAAA (15) 5.8 0.0058 P10.5 crx+ retina ATTCAACACA (9) 1.9 0.0019 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal CTTTAAAAAA (15) 7.4 0.0074 ONL TGTGTGTGTG (115) 23 0.023 ONL CTTTAAAAAA (15) 1.9 0.0019