Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.196749
BC008103
cDNA sequence BC008103
3
229524
Mm.196749
5830417I10Rik
RIKEN cDNA 5830417I10 gene
3
76022
Gene Ontology
nucleus
Human Homolog
FLJ20203[hypothetical protein FLJ20203]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 67 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
GAAGAGATGC
(
4
)
3.3
0.0033
P8 Cb GC
GCCAGCCTTT (
6
)
3.3
0.0033
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GCCAGCCTTT (
6
)
13.9
0.0139
Cb medulloblastoma
GCCAGCCCTT
(
3
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
GCCAGCCTTT (
6
)
6.8
0.0068
P8 GC+1d culture
AAGCTAGCCC
(
3
)
4.6
0.0046
P8 GC+1d culture
ACAACAAAAA (
8
)
1.1
0.0011
P8 GC+1d culture
TACTTGGAAG (
3
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
GCCAGCCTTT (
6
)
8.2
0.0082
P8 GC+SHH+1d culture
GAAGAGATGC
(
4
)
3.5
0.0035
P8 GC+SHH+1d culture
AAGCTAGCCC
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TACTTGGAAG (
3
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
GCCAGCCTTT (
6
)
10.5
0.0105
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
GCCAGCCTTT (
6
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
GAAGAGATGC
(
4
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GCCAGCCTTT (
6
)
7.2
0.0072
Hypothalamus
AAGCTAGCCC
(
3
)
3.6
0.0036
Hypothalamus
ACAACAAAAA (
8
)
1.8
0.0018
Hypothalamus
GAAGAGATGC
(
4
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
GAAGAGATGC
(
4
)
9.4
0.0094
E12.5 retina
GCCAGCCCTT
(
3
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
GCCAGCCTTT (
6
)
12.8
0.0128
E14.5 retina
AAGCTAGCCC
(
3
)
3.6
0.0036
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GCCAGCCTTT (
6
)
10.9
0.0109
E16.5 retina
GAAGAGATGC
(
4
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
GCCAGCCTTT (
6
)
5.5
0.0055
E18.5 retina
ACAACAAAAA (
8
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
GAAGAGATGC
(
4
)
3.9
0.0039
P0.5 retina
GCCAGCCTTT (
6
)
3.9
0.0039
P0.5 retina
AAGCTAGCCC
(
3
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
GCCAGCCTTT (
6
)
8.8
0.0088
P2.5 retina
AAGCTAGCCC
(
3
)
1.8
0.0018
P2.5 retina
ACAACAAAAA (
8
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
GCCAGCCTTT (
6
)
5.9
0.0059
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
GCCAGCCTTT (
6
)
11.7
0.0117
P6.5 retina
GAAGAGATGC
(
4
)
3.3
0.0033
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GCCAGCCTTT (
6
)
14.9
0.0149
P10.5 crx- retina
GAAGAGATGC
(
4
)
3.7
0.0037
P10.5 crx- retina
AAGCTAGCCC
(
3
)
1.9
0.0019
P10.5 crx- retina
ACAACAAAAA (
8
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GCCAGCCTTT (
6
)
5.8
0.0058
P10.5 crx+ retina
GCCAGCCCTT
(
3
)
1.9
0.0019
P10.5 crx+ retina
TACTTGGAAG (
3
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
GCCAGCCTTT (
6
)
5.6
0.0056
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
AAGCTAGCCC
(
3
)
1.9
0.0019
ONL
GCCAGCCTTT (
6
)
1.9
0.0019
ONL
TACTTGGAAG (
3
)
1.9
0.0019
