Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.196846	Rad23b	RAD23b homolog (S. cerevisiae)	4	4 B3	19359
Gene Ontology	DNA repair | nucleotide-excision repair | nucleus | response to DNA damage stimulus | spermatogenesis
Human Homolog	RAD23B[RAD23 homolog B (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 148 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TTTGCTTTCG (2) 4.9 0.0049 P8 Cb GC ACACACACAC (12) 3.3 0.0033 P8 Cb GC ATTTGAGAAG 3.3 0.0033 P8 Cb GC TCTGCTTCAA 3.3 0.0033 P8 Cb GC ATTTTCCTTC 1.6 0.0016 P8 Cb GC CCTGCCTTGG (4) 1.6 0.0016 P8 Cb GC TCAGAGGGTC (2) 1.6 0.0016 P8 Cb GC TTTGCTTTTG (6) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma ATTTTCAAAA (5) 4.6 0.0046 Cb medulloblastoma ACACACACAC (12) 2.3 0.0023 Cb medulloblastoma ATTTGAGAAG 2.3 0.0023 Cb medulloblastoma ATTTTCCTTC 2.3 0.0023 Cb medulloblastoma TTTGCTTTTG (6) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TTTGCTTTTG (6) 5.7 0.0057 P8 GC+1d culture ACACACACAC (12) 3.4 0.0034 P8 GC+1d culture ATTTGAGAAG 3.4 0.0034 P8 GC+1d culture CCTGCCTTGG (4) 2.3 0.0023 P8 GC+1d culture AAATTGTTCC (2) 1.1 0.0011 P8 GC+1d culture ATTTTCAAAA (5) 1.1 0.0011 P8 GC+1d culture ATTTTCCTTC 1.1 0.0011 P8 GC+1d culture TTTGCTTTCG (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture ATTTGAGAAG 9.4 0.0094 P8 GC+SHH+1d culture ATTTTCAAAA (5) 8.2 0.0082 P8 GC+SHH+1d culture ACACACACAC (12) 4.7 0.0047 P8 GC+SHH+1d culture ATTTTCCTTC 3.5 0.0035 P8 GC+SHH+1d culture TTTGCTTTTG (6) 3.5 0.0035 P8 GC+SHH+1d culture AAATTGTTCC (2) 1.2 0.0012 P8 GC+SHH+1d culture ACCACGTAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture TTTGCTTTCG (2) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts ATTTGAGAAG 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CCTGCCTTGG (4) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TTTGCTTTTG (6) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex ATTTGAGAAG 4.5 0.0045 P1 cortex TTTGCTTTCG (2) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus ATTTTCCTTC 3.6 0.0036 Hypothalamus TTTGCTTTTG (6) 3.6 0.0036 Hypothalamus ATTTTCAAAA (5) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TTTGCTTTTG (6) 3.8 0.0038 E12.5 retina ATTTGAGAAG 1.9 0.0019 E12.5 retina ATTTTCCTTC 1.9 0.0019 E12.5 retina CCTGCCTTGG (4) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina ACCACGTAAA (3) 3.6 0.0036 E14.5 retina AAATTGTTCC (2) 1.8 0.0018 E14.5 retina ACACACACAC (12) 1.8 0.0018 E14.5 retina ATTTGAGAAG 1.8 0.0018 E14.5 retina ATTTTCAAAA (5) 1.8 0.0018 E14.5 retina CCTGCCTTGG (4) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AAATTGTTCC (2) 3.6 0.0036 E16.5 retina ATTTTCAAAA (5) 3.6 0.0036 E16.5 retina CCTGCCTTGG (4) 3.6 0.0036 E16.5 retina TCAGAGGGTC (2) 3.6 0.0036 E16.5 retina ACACACACAC (12) 1.8 0.0018 E16.5 retina AGGAGAGAGT (3) 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina ATTTGAGAAG 1.8 0.0018 E16.5 retina ATTTTCCTTC 1.8 0.0018 E16.5 retina TCTGCTTCAA 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina ATTTTCCTTC 3.6 0.0036 E18.5 retina ACACACACAC (12) 1.8 0.0018 E18.5 retina ATTTGAGAAG 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina ATTTGAGAAG 5.9 0.0059 P0.5 retina TTTGCTTTTG (6) 5.9 0.0059 P0.5 retina ACACACACAC (12) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AGGAGAGAGT (3) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina ATTTTCAAAA (5) 2 0.002 P0.5 retina ATTTTCCTTC 2 0.002 P0.5 retina CCTGCCTTGG (4) 2 0.002 P0.5 retina TTTGCTTTCG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina ATTTTCAAAA (5) 5.3 0.0053 P2.5 retina CCTGCCTTGG (4) 5.3 0.0053 P2.5 retina ACACACACAC (12) 3.5 0.0035 P2.5 retina TCAGAGGGTC (2) 3.5 0.0035 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina ACACACACAC (12) 5.9 0.0059 P4.5 retina ATTTTCAAAA (5) 5.9 0.0059 P4.5 retina ATTTTCCTTC 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TCAGAGGGTC (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina ACACACACAC (12) 5 0.005 P6.5 retina ATTTGAGAAG 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TTTGCTTTCG (2) 3.3 0.0033 P6.5 retina ATTTTCAAAA (5) 1.7 0.0017 P6.5 retina ATTTTCCTTC 1.7 0.0017 P6.5 retina CCTGCCTTGG (4) 1.7 0.0017 P6.5 retina TCAGAGGGTC (2) 1.7 0.0017 P6.5 retina TTTGCTTTTG (6) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina ACACACACAC (12) 5.6 0.0056 P10.5 crx- retina TTTGCTTTTG (6) 5.6 0.0056 P10.5 crx- retina AAATTGTTCC (2) 1.9 0.0019 P10.5 crx- retina ACCACGTAAA (3) 1.9 0.0019 P10.5 crx- retina AGGAGAGAGT (3) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina ACACACACAC (12) 3.8 0.0038 P10.5 crx+ retina TTTGCTTTTG (6) 3.8 0.0038 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal ACACACACAC (12) 5.6 0.0056 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal ATTTGAGAAG 3.7 0.0037 Adult retinal CCTGCCTTGG (4) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TTTGCTTTTG (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GTCATAGCTG (590) 5.7 0.0057 ONL ATTTGAGAAG 3.8 0.0038 ONL ATTTTCAAAA (5) 3.8 0.0038 ONL ACACACACAC (12) 1.9 0.0019