Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.196884	Cpsf4	cleavage and polyadenylation specific factor 4	5		54188
Gene Ontology	mRNA processing | nucleic acid binding | nucleus | RNA binding
Human Homolog	CPSF4[cleavage and polyadenylation specific factor 4, 30kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCCACCCGT (2) 1.6 0.0016 P8 Cb GC CAGAGGCCGC (5) 1.6 0.0016 P8 Cb GC CCTGAGTGCT (4) 1.6 0.0016 P8 Cb GC CCTGGCCTTT (5) 1.6 0.0016 Cb medulloblastoma CAGAGTCAAA 2.3 0.0023 Cb medulloblastoma CCTGAGTGCT (4) 2.3 0.0023 Cb medulloblastoma TGCTTCAGTT (2) 2.3 0.0023 Cb medulloblastoma TGGGGGCTGT (2) 2.3 0.0023 P8 GC+1d culture CAGAGGCCGC (5) 5.7 0.0057 P8 GC+1d culture ATCCACCCGT (2) 1.1 0.0011 P8 GC+SHH+1d culture CAGAGGCCGC (5) 5.9 0.0059 P8 GC+SHH+1d culture ATCCACCCGT (2) 4.7 0.0047 P8 GC+SHH+1d culture TGGGGGCTGT (2) 1.2 0.0012 3T3 fibroblasts CAGAGGCCGC (5) 3.5 0.0035 3T3 fibroblasts TGGGGGCTGT (2) 3.5 0.0035 E15 cortex CAGAGGCCGC (5) 14.8 0.0148 E15 cortex CCTGAGTGCT (4) 9.9 0.0099 E15 cortex ATCCACCCGT (2) 4.9 0.0049 E15 cortex CCTGGCCTTT (5) 4.9 0.0049 P1 cortex CAGAGGCCGC (5) 4.5 0.0045 P1 cortex CAGAGTCAAA 4.5 0.0045 P1 cortex GTCCCCTGTG (3) 4.5 0.0045 Hypothalamus CAGAGTCAAA 9.1 0.0091 E12.5 retina CAGAGGCCGC (5) 9.4 0.0094 E12.5 retina ATCCACCCGT (2) 3.8 0.0038 E12.5 retina TGCTTCAGTT (2) 3.8 0.0038 E14.5 retina CAGAGGCCGC (5) 7.3 0.0073 E14.5 retina CCTGGCCTTT (5) 1.8 0.0018 E14.5 retina GTCCCCTGTG (3) 1.8 0.0018 E16.5 retina CAGAGGCCGC (5) 9.1 0.0091 E16.5 retina TGCTTCAGTT (2) 3.6 0.0036 E16.5 retina CAGAGTCAAA 1.8 0.0018 E16.5 retina GTCCCCTGTG (3) 1.8 0.0018 E18.5 retina CAGAGGCCGC (5) 1.8 0.0018 E18.5 retina CAGAGTCAAA 1.8 0.0018 E18.5 retina CCTGAGTGCT (4) 1.8 0.0018 P0.5 retina CAGAGTCAAA 2 0.002 P0.5 retina GTCCCCTGTG (3) 2 0.002 P2.5 retina CAGAGGCCGC (5) 7 0.007 P2.5 retina CAGAGTCAAA 3.5 0.0035 P4.5 retina CAGAGGCCGC (5) 7.9 0.0079 P4.5 retina CCTGAGTGCT (4) 5.9 0.0059 P4.5 retina CAGAGTCAAA 4 0.004 P6.5 retina CAGAGTCAAA 18.3 0.0183 P6.5 retina CAGAGGCCGC (5) 3.3 0.0033 P6.5 retina ATCCACCCGT (2) 1.7 0.0017 P6.5 retina TGGGGGCTGT (2) 1.7 0.0017 P10.5 crx- retina CAGAGGCCGC (5) 11.1 0.0111 P10.5 crx- retina CAGAGTCAAA 3.7 0.0037 P10.5 crx+ retina CAGAGGCCGC (5) 7.7 0.0077 P10.5 crx+ retina CAGAGTCAAA 7.7 0.0077 P10.5 crx+ retina ATCCACCCGT (2) 1.9 0.0019 Adult retinal CAGAGTCAAA 18.5 0.0185 Adult retinal CAGAGGCCGC (5) 3.7 0.0037 Adult retinal ATCCACCCGT (2) 1.9 0.0019 Adult retinal CCTGGCCTTT (5) 1.9 0.0019 ONL CAGAGTCAAA 7.7 0.0077 ONL CCTGAGTGCT (4) 3.8 0.0038 ONL CAGAGGCCGC (5) 1.9 0.0019 ONL CCTGGCCTTT (5) 1.9 0.0019