Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1971	Calr	calreticulin	8	8 37.0 cM	12317
Gene Ontology	calcium ion binding | calcium ion storage activity | cortical actin cytoskeleton organization and biogenesis | endoplasmic reticulum | external side of plasma membrane | extracellular space | protein folding | regulation of meiosis | sugar binding
Human Homolog	CALR[calreticulin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AAAAAAAAGG (6) 1.6 0.0016 Cb medulloblastoma GGGCAGGGGA (5) 9.2 0.0092 Cb medulloblastoma CAGGACGCAC (3) 2.3 0.0023 Cb medulloblastoma GAGCAAAAAA (5) 2.3 0.0023 Cb medulloblastoma TCACTCTTTA (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TCATCTTTAA (3) 14.8 0.0148 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture AAGGGAAGAG (5) 2.3 0.0023 P8 GC+1d culture GGTGGGGGTG (5) 2.3 0.0023 P8 GC+1d culture TGCTGTGAGG (4) 2.3 0.0023 P8 GC+1d culture GGGCAGGGGA (5) 1.1 0.0011 P8 GC+1d culture GTGGGATGGA (2) 1.1 0.0011 P8 GC+SHH+1d culture TCATCTTTAA (3) 7 0.007 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GTGGGATGGA (2) 3.5 0.0035 P8 GC+SHH+1d culture TGCTGTGAGG (4) 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAGG (6) 1.2 0.0012 P8 GC+SHH+1d culture TCACTCTTTA (2) 1.2 0.0012 3T3 fibroblasts TGCTGTGAGG (4) 21 0.021 3T3 fibroblasts TCATCTTTAA (3) 7 0.007 3T3 fibroblasts AAGGGAAGAG (5) 3.5 0.0035 E15 cortex GAAAAAGTAG (5) 9.9 0.0099 E15 cortex TGCTGTGAGG (4) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GAAAAAGTAG (5) 4.5 0.0045 P1 cortex TCATCTTTAA (3) 4.5 0.0045 P1 cortex TGCTGTGAGG (4) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GGGCAGGGGA (5) 30.8 0.0308 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GAAAAGGGAG (7) 1.8 0.0018 Hypothalamus TCATCTTTAA (3) 1.8 0.0018 E12.5 retina GTGGGATGGA (2) 7.5 0.0075 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina TGCTGTGAGG (4) 3.8 0.0038 E12.5 retina GAAAAGGGAG (7) 1.9 0.0019 E12.5 retina GAGCAAAAAA (5) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina AAGGGAAGAG (5) 1.8 0.0018 E14.5 retina GGGCAGGGGA (5) 1.8 0.0018 E14.5 retina TGCTGTGAGG (4) 1.8 0.0018 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GGGCAGGGGA (5) 1.8 0.0018 E16.5 retina GTGGGATGGA (2) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GGGCAGGGGA (5) 3.6 0.0036 E18.5 retina GTGGGATGGA (2) 3.6 0.0036 E18.5 retina AAAAAAAAGG (6) 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GAAAAAGTAG (5) 3.9 0.0039 P0.5 retina AAGGGAAGAG (5) 2 0.002 P0.5 retina CAGGACGCAC (3) 2 0.002 P0.5 retina GAGCAAAAAA (5) 2 0.002 P0.5 retina TCATCTTTAA (3) 2 0.002 P2.5 retina GTGGGATGGA (2) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GGGCAGGGGA (5) 5.3 0.0053 P2.5 retina TCATCTTTAA (3) 3.5 0.0035 P2.5 retina CAGGACGCAC (3) 1.8 0.0018 P4.5 retina GTGGGATGGA (2) 13.9 0.0139 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina TCATCTTTAA (3) 7.9 0.0079 P4.5 retina GAAAAAGTAG (5) 4 0.004 P4.5 retina GGGCAGGGGA (5) 4 0.004 P4.5 retina AAGGGAAGAG (5) 2 0.002 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GGGCAGGGGA (5) 5 0.005 P6.5 retina AAAAAAAAGG (6) 1.7 0.0017 P6.5 retina CAGGACGCAC (3) 1.7 0.0017 P6.5 retina GTGGGATGGA (2) 1.7 0.0017 P6.5 retina TCATCTTTAA (3) 1.7 0.0017 P6.5 retina TGCTGTGAGG (4) 1.7 0.0017 P10.5 crx- retina TGCTGTGAGG (4) 7.4 0.0074 P10.5 crx- retina CAGGACGCAC (3) 1.9 0.0019 P10.5 crx- retina GGGCAGGGGA (5) 1.9 0.0019 P10.5 crx- retina TCACTCTTTA (2) 1.9 0.0019 P10.5 crx+ retina TGCTGTGAGG (4) 9.6 0.0096 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GGGCAGGGGA (5) 1.9 0.0019 P10.5 crx+ retina TCATCTTTAA (3) 1.9 0.0019 Adult retinal GGGCAGGGGA (5) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal TCATCTTTAA (3) 1.9 0.0019 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GGTGGGGGTG (5) 1.9 0.0019 ONL GTGGGATGGA (2) 1.9 0.0019 ONL TCATCTTTAA (3) 1.9 0.0019