Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.200373	Sgpl1	sphingosine phosphate lyase 1	10	10 32.0 cM	20397
Gene Ontology	amino acid metabolism | apoptosis | carboxy-lyase activity | endoplasmic reticulum | integral to membrane | lipid metabolism | lyase activity | sphinganine-1-phosphate aldolase activity
Human Homolog	SGPL1[sphingosine-1-phosphate lyase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CACACATAAA (3) 1.6 0.0016 P8 Cb GC TCACTTTTAA (3) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GCTGCTGCCA (7) 4.6 0.0046 Cb medulloblastoma TTTTTCAGAA (4) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TCACTTTTAA (3) 5.7 0.0057 P8 GC+1d culture AATTAAAATG 2.3 0.0023 P8 GC+1d culture TTTTTCAGAA (4) 2.3 0.0023 P8 GC+1d culture TTTTTCAGAG (3) 2.3 0.0023 P8 GC+1d culture CATACACACA (7) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture TCACTTTTAA (3) 5.9 0.0059 P8 GC+SHH+1d culture CACACATAAA (3) 2.3 0.0023 P8 GC+SHH+1d culture TTTTTCAGAA (4) 2.3 0.0023 P8 GC+SHH+1d culture AATTAAAATG 1.2 0.0012 P8 GC+SHH+1d culture GAGAAGCAGG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTTTTCAGAG (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GCTGCTGCCA (7) 35 0.035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CATACACACA (7) 4.9 0.0049 E15 cortex TCACTTTTAA (3) 4.9 0.0049 E15 cortex TTTTTCAGAG (3) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex AGAAGCAGGT (6) 9.1 0.0091 P1 cortex GGGTGCTGGT (2) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TCACTTTTAA (3) 3.6 0.0036 Hypothalamus CATACACACA (7) 1.8 0.0018 Hypothalamus GCTGCTGCCA (7) 1.8 0.0018 Hypothalamus TGTATATGTG (10) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GCTGCTGCCA (7) 5.6 0.0056 E12.5 retina TCACTTTTAA (3) 3.8 0.0038 E12.5 retina CACACATAAA (3) 1.9 0.0019 E12.5 retina TTTTTCAGAG (3) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GCTGCTGCCA (7) 1.8 0.0018 E14.5 retina TCACTTTTAA (3) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TCACTTTTAA (3) 5.4 0.0054 E16.5 retina TTTTTCAGAA (4) 5.4 0.0054 E16.5 retina GCTGCTGCCA (7) 1.8 0.0018 E16.5 retina TGTATATGTG (10) 1.8 0.0018 E16.5 retina TTTTTCAGAG (3) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina CACACATAAA (3) 3.6 0.0036 E18.5 retina GCTGCTGCCA (7) 3.6 0.0036 E18.5 retina AATTAAAATG 1.8 0.0018 E18.5 retina TGTATATGTG (10) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina TCACTTTTAA (3) 3.9 0.0039 P0.5 retina TCCCTTTTAA 3.9 0.0039 P0.5 retina AGAAGCAGGT (6) 2 0.002 P0.5 retina CACACATAAA (3) 2 0.002 P0.5 retina GGGTGCTGGT (2) 2 0.002 P0.5 retina TGTATATGTG (10) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CACACATAAA (3) 5.3 0.0053 P2.5 retina TGTATATGTG (10) 5.3 0.0053 P2.5 retina GCTGCTGCCA (7) 3.5 0.0035 P2.5 retina AATTAAAATG 1.8 0.0018 P2.5 retina TTTTTCAGAG (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CACACATAAA (3) 2 0.002 P4.5 retina CATACACACA (7) 2 0.002 P4.5 retina TCACTTTTAA (3) 2 0.002 P4.5 retina TTTTTCAGAA (4) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TGTATATGTG (10) 3.3 0.0033 P6.5 retina TTTTTCAGAA (4) 3.3 0.0033 P6.5 retina CATACACACA (7) 1.7 0.0017 P6.5 retina GGGTGCTGGT (2) 1.7 0.0017 P6.5 retina TCACTTTTAA (3) 1.7 0.0017 P6.5 retina TTTTTCAGAG (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CACACATAAA (3) 3.7 0.0037 P10.5 crx- retina TGTATATGTG (10) 3.7 0.0037 P10.5 crx- retina TTTTTCAGAA (4) 1.9 0.0019 P10.5 crx- retina TTTTTCAGAG (3) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CATACACACA (7) 1.9 0.0019 P10.5 crx+ retina GCTGCTGCCA (7) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal TCCCTTTTAA 9.3 0.0093 Adult retinal GAGAAGCAGG (4) 1.9 0.0019 Adult retinal GCTGCTGCCA (7) 1.9 0.0019 Adult retinal TCACTTTTAA (3) 1.9 0.0019 Adult retinal TGTATATGTG (10) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL CATACACACA (7) 3.8 0.0038 ONL TGTATATGTG (10) 3.8 0.0038 ONL CACACATAAA (3) 1.9 0.0019 ONL GAGAAGCAGG (4) 1.9 0.0019 ONL TTTTTCAGAA (4) 1.9 0.0019