Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.200843
Sncb
synuclein, beta
13
13 B1 (13 35.0 cM)
104069
Gene Ontology
cytoplasm
|
mitochondrion
Human Homolog
SNCB[synuclein, beta]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 18 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 36 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AATAAAGCCA
(
3
)
1.6
0.0016
Cb medulloblastoma
AATAAAGCCA
(
3
)
71.7
0.0717
Cb medulloblastoma
CCACAATCAC (
2
)
2.3
0.0023
Cb medulloblastoma
GCCAAGGAGG
(
6
)
2.3
0.0023
P8 GC+1d culture
AATAAAGCCA
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AATAAAGCCA
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
GCCAAGGAGG
(
6
)
1.2
0.0012
E15 cortex
CCACAATCAC (
2
)
4.9
0.0049
P1 cortex
AATAAAGCCA
(
3
)
9.1
0.0091
Hypothalamus
AATAAAGCCA
(
3
)
85.1
0.0851
Hypothalamus
TTCTATGTAT
(
2
)
5.4
0.0054
Hypothalamus
CCACAATCAC (
2
)
1.8
0.0018
Hypothalamus
GCCAAGGAGG
(
6
)
1.8
0.0018
E12.5 retina
AATAAAGCCA
(
3
)
11.3
0.0113
E14.5 retina
CAGTCACAAT
(
2
)
1.8
0.0018
E16.5 retina
AATAAAGCCA
(
3
)
1.8
0.0018
E16.5 retina
TTCTATGTAT
(
2
)
1.8
0.0018
E18.5 retina
AATAAAGCCA
(
3
)
14.6
0.0146
P0.5 retina
AATAAAGCCA
(
3
)
3.9
0.0039
P0.5 retina
CCACAATCAC (
2
)
2
0.002
P2.5 retina
AATAAAGCCA
(
3
)
8.8
0.0088
P4.5 retina
AATAAAGCCA
(
3
)
33.7
0.0337
P4.5 retina
CAGTCACAAT
(
2
)
2
0.002
P4.5 retina
TTCTATGTAT
(
2
)
2
0.002
P6.5 retina
AATAAAGCCA
(
3
)
51.7
0.0517
P6.5 retina
TTCTATGTAT
(
2
)
3.3
0.0033
P10.5 crx- retina
AATAAAGCCA
(
3
)
91
0.091
P10.5 crx- retina
GCCAAGGAGG
(
6
)
1.9
0.0019
P10.5 crx- retina
TTCTATGTAT
(
2
)
1.9
0.0019
P10.5 crx+ retina
AATAAAGCCA
(
3
)
57.7
0.0577
P10.5 crx+ retina
CAGTCACAAT
(
2
)
1.9
0.0019
P10.5 crx+ retina
TTCTATGTAT
(
2
)
1.9
0.0019
Adult retinal
AATAAAGCCA
(
3
)
63
0.063
Adult retinal
GCCAAGGAGG
(
6
)
1.9
0.0019
ONL
AATAAAGCCA
(
3
)
40.2
0.0402
ONL
TTCTATGTAT
(
2
)
1.9
0.0019
