Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.205421
A130078K24Rik
RIKEN cDNA A130078K24 gene
14
399616
Mm.205421
Fndc3
fibronectin type III domain containing 3
14
14 42.0 cM
319448
Human Homolog
FNDC3[fibronectin type III domain containing 3]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 122 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGTGTGTGTG (
115
)
27.7
0.0277
P8 Cb GC
TCTGCGTCCT
(
3
)
16.3
0.0163
P8 Cb GC
GAAAATAAAA
(
4
)
11.4
0.0114
P8 Cb GC
TGCACACACA (
29
)
8.2
0.0082
P8 Cb GC
GCGGCGGCGG (
24
)
6.5
0.0065
P8 Cb GC
GGAAAATACA (
4
)
1.6
0.0016
P8 Cb GC
TGAAAGAACA
(
6
)
1.6
0.0016
Cb medulloblastoma
TGTGTGTGTG (
115
)
30.1
0.0301
Cb medulloblastoma
TCTGCGTCCT
(
3
)
6.9
0.0069
Cb medulloblastoma
GAAAATAAAA
(
4
)
4.6
0.0046
Cb medulloblastoma
GCGGCGGCGG (
24
)
4.6
0.0046
Cb medulloblastoma
TAACACTGAC
(
4
)
2.3
0.0023
Cb medulloblastoma
TGAAAGAACA
(
6
)
2.3
0.0023
Cb medulloblastoma
TGCACACACA (
29
)
2.3
0.0023
P8 GC+1d culture
TGTGTGTGTG (
115
)
27.4
0.0274
P8 GC+1d culture
TCTGCGTCCT
(
3
)
9.1
0.0091
P8 GC+1d culture
TGCACACACA (
29
)
9.1
0.0091
P8 GC+1d culture
GCGGCGGCGG (
24
)
4.6
0.0046
P8 GC+1d culture
GAAAATAAAA
(
4
)
2.3
0.0023
P8 GC+1d culture
TAACACTGAC
(
4
)
2.3
0.0023
P8 GC+1d culture
GCAGTCATCT (
2
)
1.1
0.0011
P8 GC+SHH+1d culture
TGTGTGTGTG (
115
)
28.1
0.0281
P8 GC+SHH+1d culture
GCGGCGGCGG (
24
)
16.4
0.0164
P8 GC+SHH+1d culture
TGCACACACA (
29
)
16.4
0.0164
P8 GC+SHH+1d culture
TCTGCGTCCT
(
3
)
12.9
0.0129
P8 GC+SHH+1d culture
GAAAATAAAA
(
4
)
9.4
0.0094
P8 GC+SHH+1d culture
TAACACTGAC
(
4
)
5.9
0.0059
P8 GC+SHH+1d culture
GCAGTCATCT (
2
)
1.2
0.0012
3T3 fibroblasts
TGTGTGTGTG (
115
)
28
0.028
3T3 fibroblasts
TGCACACACA (
29
)
14
0.014
3T3 fibroblasts
TCTGCGTCCT
(
3
)
7
0.007
3T3 fibroblasts
GCGGCGGCGG (
24
)
3.5
0.0035
3T3 fibroblasts
TGAAAGAACA
(
6
)
3.5
0.0035
P1 cortex
TGTGTGTGTG (
115
)
18.2
0.0182
P1 cortex
GAAAATAAAA
(
4
)
4.5
0.0045
P1 cortex
TGCACACACA (
29
)
4.5
0.0045
Hypothalamus
TGTGTGTGTG (
115
)
25.4
0.0254
Hypothalamus
TCTGCGTCCT
(
3
)
10.9
0.0109
Hypothalamus
GCGGCGGCGG (
24
)
7.2
0.0072
Hypothalamus
GAAAATAAAA
(
4
)
5.4
0.0054
Hypothalamus
TAACACTGAC
(
4
)
1.8
0.0018
Hypothalamus
TGCACACACA (
29
)
1.8
0.0018
E12.5 retina
TGTGTGTGTG (
115
)
43.2
0.0432
E12.5 retina
TCTGCGTCCT
(
3
)
18.8
0.0188
E12.5 retina
GCGGCGGCGG (
24
)
15
0.015
E12.5 retina
GAAAATAAAA
(
4
)
9.4
0.0094
E12.5 retina
TAACACTGAC
(
4
)
7.5
0.0075
E12.5 retina
TGCACACACA (
29
)
5.6
0.0056
E14.5 retina
TGTGTGTGTG (
115
)
54.7
0.0547
E14.5 retina
TCTGCGTCCT
(
3
)
25.5
0.0255
E14.5 retina
TGCACACACA (
29
)
9.1
0.0091
E14.5 retina
GCGGCGGCGG (
24
)
5.5
0.0055
E14.5 retina
GAAAATAAAA
(
4
)
3.6
0.0036
E14.5 retina
GCAGTCATCT (
2
)
1.8
0.0018
E14.5 retina
GGAAAATACA (
4
)
1.8
0.0018
E16.5 retina
TGTGTGTGTG (
115
)
39.8
0.0398
E16.5 retina
TCTGCGTCCT
(
3
)
16.3
0.0163
E16.5 retina
GCGGCGGCGG (
24
)
14.5
0.0145
E16.5 retina
TGCACACACA (
29
)
9.1
0.0091
E16.5 retina
GAAAATAAAA
(
4
)
3.6
0.0036
E16.5 retina
GCAGTCATCT (
2
)
1.8
0.0018
E16.5 retina
TAACACTGAC
(
4
)
1.8
0.0018
E18.5 retina
TGTGTGTGTG (
115
)
47.3
0.0473
E18.5 retina
GAAAATAAAA
(
4
)
12.7
0.0127
E18.5 retina
TCTGCGTCCT
(
3
)
12.7
0.0127
E18.5 retina
GCGGCGGCGG (
24
)
9.1
0.0091
E18.5 retina
TGCACACACA (
29
)
7.3
0.0073
E18.5 retina
GGAAAATACA (
4
)
1.8
0.0018
E18.5 retina
TAACACTGAC
(
4
)
1.8
0.0018
P0.5 retina
TGTGTGTGTG (
115
)
21.6
0.0216
P0.5 retina
TCTGCGTCCT
(
3
)
17.7
0.0177
P0.5 retina
GCGGCGGCGG (
24
)
7.9
0.0079
P0.5 retina
GAAAATAAAA
(
4
)
2
0.002
P0.5 retina
TAACACTGAC
(
4
)
2
0.002
P0.5 retina
TGCACACACA (
29
)
2
0.002
P2.5 retina
TGTGTGTGTG (
115
)
35.2
0.0352
P2.5 retina
TAACACTGAC
(
4
)
12.3
0.0123
P2.5 retina
TCTGCGTCCT
(
3
)
8.8
0.0088
P2.5 retina
GAAAATAAAA
(
4
)
7
0.007
P2.5 retina
GCGGCGGCGG (
24
)
7
0.007
P2.5 retina
TGCACACACA (
29
)
3.5
0.0035
P2.5 retina
GGAAAATACA (
4
)
1.8
0.0018
P4.5 retina
TGTGTGTGTG (
115
)
47.6
0.0476
P4.5 retina
TAACACTGAC
(
4
)
17.8
0.0178
P4.5 retina
GAAAATAAAA
(
4
)
11.9
0.0119
P4.5 retina
TCTGCGTCCT
(
3
)
11.9
0.0119
P4.5 retina
GCGGCGGCGG (
24
)
4
0.004
P4.5 retina
TGCACACACA (
29
)
2
0.002
P6.5 retina
TGTGTGTGTG (
115
)
41.7
0.0417
P6.5 retina
TCTGCGTCCT
(
3
)
11.7
0.0117
P6.5 retina
TGCACACACA (
29
)
11.7
0.0117
P6.5 retina
GAAAATAAAA
(
4
)
5
0.005
P6.5 retina
GCGGCGGCGG (
24
)
5
0.005
P6.5 retina
GCAGTCATCT (
2
)
3.3
0.0033
P6.5 retina
GGAAAATACA (
4
)
1.7
0.0017
P10.5 crx- retina
TGTGTGTGTG (
115
)
59.4
0.0594
P10.5 crx- retina
TCTGCGTCCT
(
3
)
20.4
0.0204
P10.5 crx- retina
GCAGTCATCT (
2
)
5.6
0.0056
P10.5 crx- retina
TAACACTGAC
(
4
)
5.6
0.0056
P10.5 crx- retina
TGCACACACA (
29
)
3.7
0.0037
P10.5 crx- retina
GCGGCGGCGG (
24
)
1.9
0.0019
P10.5 crx- retina
TGAAAGAACA
(
6
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTGTG (
115
)
44.2
0.0442
P10.5 crx+ retina
TCTGCGTCCT
(
3
)
23.1
0.0231
P10.5 crx+ retina
GCGGCGGCGG (
24
)
15.4
0.0154
P10.5 crx+ retina
TGCACACACA (
29
)
9.6
0.0096
P10.5 crx+ retina
TAACACTGAC
(
4
)
7.7
0.0077
P10.5 crx+ retina
GCAGTCATCT (
2
)
1.9
0.0019
P10.5 crx+ retina
GGAAAATACA (
4
)
1.9
0.0019
Adult retinal
TGTGTGTGTG (
115
)
53.7
0.0537
Adult retinal
GCGGCGGCGG (
24
)
16.7
0.0167
Adult retinal
TGCACACACA (
29
)
9.3
0.0093
Adult retinal
TAACACTGAC
(
4
)
3.7
0.0037
Adult retinal
GAAAATAAAA
(
4
)
1.9
0.0019
Adult retinal
TCTGCGTCCT
(
3
)
1.9
0.0019
Adult retinal
TGAAAGAACA
(
6
)
1.9
0.0019
ONL
TGTGTGTGTG (
115
)
23
0.023
ONL
TGCACACACA (
29
)
15.3
0.0153
ONL
GCGGCGGCGG (
24
)
9.6
0.0096
ONL
GAAAATAAAA
(
4
)
5.7
0.0057
ONL
TCTGCGTCCT
(
3
)
3.8
0.0038
ONL
GCAGTCATCT (
2
)
1.9
0.0019
