Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.210018	Plekhc1	pleckstrin homology domain containing, family C (with FERM domain) member 1	14		218952
Gene Ontology	cell adhesion | cellular morphogenesis | cytoskeleton | protein binding
Human Homolog	PLEKHC1[pleckstrin homology domain containing, family C (with FERM domain) member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GTGGCTTACA (19) 11.4 0.0114 P8 Cb GC AATTAAAGAC (4) 8.2 0.0082 P8 Cb GC AAGCAGTGGA (6) 1.6 0.0016 P8 Cb GC TGTTTGTGTT (11) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GTGGCTTACA (19) 23.1 0.0231 Cb medulloblastoma AATTAAAGAC (4) 4.6 0.0046 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GTGGCTTACA (19) 30.8 0.0308 P8 GC+1d culture AATTAAAGAC (4) 4.6 0.0046 P8 GC+1d culture CTGTACATTG (6) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGGCTTACA (19) 36.3 0.0363 P8 GC+SHH+1d culture AATTAAAGAC (4) 8.2 0.0082 P8 GC+SHH+1d culture AAGCAGGGGA (4) 2.3 0.0023 P8 GC+SHH+1d culture AAGCAGTGGA (6) 2.3 0.0023 P8 GC+SHH+1d culture CTGTACATTG (6) 1.2 0.0012 P8 GC+SHH+1d culture GCGGGCCCTG (3) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GTGGCTTACA (19) 35 0.035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GTGGCTTACA (19) 19.8 0.0198 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTGGCTTACA (19) 22.7 0.0227 P1 cortex GCGGGCCCTG (3) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GTGGCTTACA (19) 23.5 0.0235 Hypothalamus AATTAAAGAC (4) 3.6 0.0036 Hypothalamus AAGCAGGGGA (4) 1.8 0.0018 Hypothalamus CTGTACATTG (6) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GTGGCTTACA (19) 43.2 0.0432 E12.5 retina AATTAAAGAC (4) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTGGCTTACA (19) 51 0.051 E14.5 retina AATTAAAGAC (4) 7.3 0.0073 E14.5 retina TAGGTGCTGA 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTGGCTTACA (19) 50.7 0.0507 E16.5 retina AATTAAAGAC (4) 3.6 0.0036 E16.5 retina GCGGGCCCTG (3) 1.8 0.0018 E16.5 retina TAGGTGCTGA 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GTGGCTTACA (19) 40 0.04 E18.5 retina AATTAAAGAC (4) 3.6 0.0036 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GTGGCTTACA (19) 45.1 0.0451 P0.5 retina AATGAGATCT (3) 5.9 0.0059 P0.5 retina AAAGCAGTGG (3) 2 0.002 P0.5 retina AATTAAAGAC (4) 2 0.002 P0.5 retina TGTTTGTGTT (11) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GTGGCTTACA (19) 21.1 0.0211 P2.5 retina ATGGAAGCCT 3.5 0.0035 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GTGGCTTACA (19) 25.8 0.0258 P4.5 retina AATTAAAGAC (4) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGGCTTACA (19) 35 0.035 P6.5 retina AATTAAAGAC (4) 1.7 0.0017 P6.5 retina ATGGAAGCCT 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GTGGCTTACA (19) 24.2 0.0242 P10.5 crx- retina AATTAAAGAC (4) 9.3 0.0093 P10.5 crx- retina AAAGCAGTGG (3) 3.7 0.0037 P10.5 crx- retina AAGCAGGGGA (4) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GTGGCTTACA (19) 32.7 0.0327 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GTGGCTTACA (19) 18.5 0.0185 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GTGGCTTACA (19) 30.6 0.0306 ONL TAGGTGCTGA 1.9 0.0019 ONL TGTTTGTGTT (11) 1.9 0.0019